| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0230 |
|---|
| Symbol | |
|---|
| ID | 4476475 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 259531 |
|---|
| End bp | 260217 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639724759 |
|---|
| Product | heme exporter protein CcmB |
|---|
| Protein accession | YP_867880 |
|---|
| Protein GI | 117918688 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2386] ABC-type transport system involved in cytochrome c biogenesis, permease component |
|---|
| TIGRFAM ID | [TIGR01190] heme exporter protein CcmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.051216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000000381646 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAG GCATCAGCTT TACCCAAGCG TTTTTAACAT TACTACAGCG GGATCTAAAA
ATCGCCATTC GTCACCGCGG TGATATCTTT AATCCCTTGT TATTCTTCAT CATGGTTGTG
ACTCTATTCC CTTTGGGAAT TGGTCCTGAA CCACAAATGC TAGCCCGTAT TGCTCCTGGG
ATTATTTGGG TTGCGGCATT ACTGGCGTCT ATGCTTTCAC TCGAGCGTCT ATTTAAAGCC
GACTTTAGCG ATGGCAGCTT AGAGCAAATG CTACTCAGCC CACAGCCACT CTCGGTATTG
GTATTGGCCA AAGTATTAGC CCACTGGCTA CTGACTGGCG TGCCACTGAT TATTATCGCG
CCCTTGCTGG CGGTGCTGCT CAATTTAGAC GCCAACAGTT ATGGTGCGCT GATTGCAACA
CTCGCACTGG GCACACCAGT ATTATCCCTC TTAGGCGCAA TTGGTGTGGC CCTAACCGTG
GGTCTGCGTA AAGGCGGCGT GTTACTGAGT CTGCTTATTT TACCACTTTA TATTCCTGTG
CTGATTTTCG CGACCAGCGC CATAGATGCT GCAGGAATGA ATTTACCCTA TGATGGTCAG
CTCGCTATAA TTGGCGCCAT GTTGATCGGT TCGTTAACCT TAGCACCCTT TGCAATTGGT
GCATCTCTGC GAGTGAGTAC TAACTAA
|
|---|
| Protein sequence | MKRGISFTQA FLTLLQRDLK IAIRHRGDIF NPLLFFIMVV TLFPLGIGPE PQMLARIAPG
IIWVAALLAS MLSLERLFKA DFSDGSLEQM LLSPQPLSVL VLAKVLAHWL LTGVPLIIIA
PLLAVLLNLD ANSYGALIAT LALGTPVLSL LGAIGVALTV GLRKGGVLLS LLILPLYIPV
LIFATSAIDA AGMNLPYDGQ LAIIGAMLIG SLTLAPFAIG ASLRVSTN
|
|---|
| |