| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0223 |
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| Symbol | rpsD |
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| ID | 4476468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 254846 |
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| End bp | 255466 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 639724752 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_867873 |
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| Protein GI | 117918681 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00230473 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000516884 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGGCAAGAT ACTTGGGTCC CAAGCTCAAG CTCAGCCGCC GAGAAGGTAC TGACCTTTTC
TTAAAAAGCG GTGTGAGAGC AATCGATTCA AAGTGTAAAC TGGAATCTGC ACCAGGACAG
CATGGCGCTC GTAAGCCACG TCTGTCAGAG TACGGTTTAC AGTTACGCGA AAAACAAAAA
GTTCGTCGTA TTTACGGTGT GTTAGAAAAG CAATTCCGTA ACTACTACAA AGAGGCTGCA
CGTCTGAAAG GCAACACTGG TGAGAACCTG TTGCAACTTT TAGAAACTCG TTTAGATAAC
GTTGTTTATC GTATGGGTTT CGGTGCGACT CGTGCAGAAT CACGTCAGCT AGTAAGCCAT
AAATCAATTA TGGTTAACGG TCGTGTTGTT AACATTCCGT CATTCAAAGT GTCTGCGAAT
GATGTTGTAA GCATCCGTGA AAAGTCACGC ACTCAAGCTC GTATCAAAGC GGCTTTAGAA
GTGGCTGCTC AACGCGAGAA GCCTACATGG GTTGAAGTCG ACAGCGCGAA AATGGAAGGT
GCTTTCAAGC GTATTCCAGA ACGTAGCGAT TTGTCTGCGG AAATTAACGA ACAGCTGATC
GTCGAGCTTT ACTCTAAGTA A
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| Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLESAPGQ HGARKPRLSE YGLQLREKQK
VRRIYGVLEK QFRNYYKEAA RLKGNTGENL LQLLETRLDN VVYRMGFGAT RAESRQLVSH
KSIMVNGRVV NIPSFKVSAN DVVSIREKSR TQARIKAALE VAAQREKPTW VEVDSAKMEG
AFKRIPERSD LSAEINEQLI VELYSK
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