| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0193 |
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| Symbol | |
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| ID | 4477965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 234206 |
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| End bp | 238423 |
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| Gene Length | 4218 bp |
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| Protein Length | 1405 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639724722 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_867843 |
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| Protein GI | 117918651 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.314811 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000822489 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAAGTT TCTGAAACAG CAAAGCAAGA CTGAAGAATT TAACGGCATC
AAAATTGGTC TGGCATCGCC TGATCTGATC CGTTCTTGGT CTTTTGGTGA AGTTAAGAAG
CCAGAAACCA TTAACTACCG TACCTTCAAG CCTGAGCGTG AAGGTCTGTT CTGTGCGCGT
ATCTTTGGCC CGGTCAAAGA TTACGAATGT TTGTGCGGTA AGTACAAGCG TTTGAAGCAC
CGTGGTGTGA TCTGTGAAAA GTGTGGAGTA GAAGTTACCC AGACTAAAGT ACGTCGTGAG
CGTATGGGTC ACATTGAACT GGCTAGCCCA GTTGCCCACA TTTGGTTCTT GAAATCACTG
CCGTCCCGCA TCGGTTTAAT GCTGGACATG ACGCTGCGTG ATATCGAACG CGTACTGTAT
TTTGAATCTT TCGTCGTGAT CGAGCCTGGC ATGACCAGCC TTGAACGTGG CCAAATGCTG
ACAGAAGAAA ACTATCTGGA CGCATTAGAA GAATACGGTG ACGAATTCGA AGCTAAGATG
GGTGCTGAAG CGGTATTAGA ACTGCTGCGC GCAATCGATC TCGAAAAAGA AATCGAACAA
ATGCGTGAAG AGCTGCCATC AATCAACTCT GAGACTCGTC GCAAGAAAGT GACTAAACGT
CTTAAGTTGA TGGAAGCGTT CCACACTTCT GGCAACAAGC CAGAGTGGAT GATCTTAAAA
GTACTGCCTG TGTTACCACC TGACTTACGT CCGCTGGTAC CGCTCGATGG CGGCCGCTTC
GCGACTTCAG ATCTGAACGA TCTGTATCGC CGCGTGATCA ACCGTAACAA CCGTTTGAAG
CGTCTGTTAG ATTTAGCTGC GCCGGACATC ATCGTACGCA ACGAAAAGCG TATGTTACAA
GAGTCCGTTG ATGCGCTATT AGATAACGGT CGTCGTGGTC GTGCTATTAC TGGTTCTAAC
AAACGTCCTC TGAAATCTTT GGCCGACATG ATCAAAGGTA AACAAGGTCG TTTCCGTCAG
AACTTGTTAG GTAAGCGTGT TGACTACTCA GGTCGTTCGG TAATTACCGT AGGTCCTACT
TTACGTCTGC ACCAATGTGG TCTTCCTAAG AAGATGGCAC TGGAACTGTT CAAGCCATTC
ATCTATGGCA AGCTGGAAGG TCGTGGCTTA GCGACAACCA TCAAAGCGGC TAAGAAGATG
GTAGAGCGTG AAGTGGCGGA AGTTTGGGAC GTTCTAGATG AAGTGATCCG CGAACATCCA
GTGATGCTTA ACCGTGCACC AACACTGCAC AGACTGGGTA TCCAAGCGTT CGAACCTGTA
CTGATTGAAG GTAAAGCGAT CCAGTTACAC CCACTCGTTT GTGCGGCATA TAACGCCGAC
TTCGACGGTG ACCAAATGGC GGTACACGTA CCGTTAACAC TGGAAGCGCA GCTTGAAGCT
CGTGCCTTGA TGATGTCTAC CAACAACATC CTGTCACCAG CAAACGGCGA GCCTGTTATC
ACTCCGTCTC AAGACGTGGT ATTAGGTCTG TACTACACCA GCCGTGAGCG TATCAACGGC
CGTGGTGAAG GTATGTACTT TATGTCTGTT GCTGAAGTTG AAAAAGCTTA CGCAACTGGC
GCTGCTGAAC TGCATGCCCG CGTGAAAGTG CGTATCACTG AAACCGTTAT CGGTGACAAT
GGTGAGCGTA CTGAGCAACG TCGTATCGTA GATACAACTG TGGGTCGTGC TCTGCTGTCA
CAAATTCTGC CAGCAGGTTT GTCATTTGAT CTGGTTAACC AGAACATGGG CAAAAAGCAG
ATTTCTAAAC TATTGAACAC TTGTTACCGT CAATTAGGTC TGAAAGATAC TGTTATCTTC
GCTGACCAAC TGATGTACAC AGGTTTCCGT TACGCCACTA TCTCTGGTGC ATCTGTCGGT
ATTGACGACA TGGTGATCCC AGCTGAGAAG TACACCTTAG TTGCTGACGC TGAAGCAGAA
GTGCTCGAGA TTCAAGAGCA GTTCCAATCA GGTCTGGTAA CCGCGGGTGA GCGTTACAAC
AAAGTCATCG ACATCTGGGC AAGTGCGAAC GAAAAAGTTT CTAAAGCGAT GATGGAAAAC
CTGTCAACTG AGACAGTGAT TAACCGTGAT GGCGTTGAAG AGAAACAAGC ATCGTTCAAC
AGCATTTACA TGATGGCCGA CTCGGGCGCT CGTGGTAGTG CCGCACAGAT CCGTCAGTTA
GCGGGTATGC GTGGTCTGAT GGCGAAACCA GACGGTTCGA TCATCGAAAC CCCAATCGTG
GCGAACTTCC GTGAAGGTCT GAACGTACTT CAGTACTTCA TCTCAACCCA CGGTGCGCGT
AAAGGTCTTG CCGATACCGC ATTGAAGACA GCGAACTCGG GTTACCTGAC TCGTCGTCTG
GTTGATGTTG CTCAAGACTT AGTGGTCATC GAAGACGATT GTGGTACTCA CGAAGGTCTG
ACAATGAAGC CGCTGATCGA AGGTGGTGAC GTTGTTGAGC CATTACGTGA ACGCGTACTG
GGTCGTGTGG TTGCGGTTGA TGTTCTGTAC CCTGGTACTG AAGATGTGCT TGCGCCACGT
AACACTCTGC TCGATGAAGC ATGGTGTGAC AAGTTAGAAG AACACTCAAT CGACGAAGTG
ATTGTACGTT CAGTCATTAC CTGTGATACC GACTTCGGTG TGTGTGCGGC ATGTTATGGC
CGTGACTTAG CCCGTGGTCA CCTGATTAAC CACGGCGAAG CCATCGGTGT TGTCGCGGCG
CAATCAATCG GTGAACCAGG TACACAGTTA ACGATGCGTA CGTTCCACAT CGGTGGTGCG
GCATCAAGAG CGTCTGCAGA AAACAACGTT CAAGTGAAGA ACTCTGGTTC GTTGAAACTG
CACAATGCTA AGTACGTAAC TAACACTGAC GGCAAGCTGG TTATCGTTTC TCGTTCTTCT
GAACTGGCGA TCATCGACGA ACTAGGTCGT GAGAAAGAGC GTTATAAAGT GCCTTACGGT
ACTGTGCTCG AGAAGTTAGA AGAAGCTGCG GTAGAAGCGG GCGATATCAT CGCTAACTGG
GATCCACATA CTCACCCAAT CATCACCGAA GTGGCGGGTA GTATTAAGTT CGTTGACATG
ATCGACGGCG TGACCATGAC TCGTCAAACA GACGAACTGA CTGGTCTGTC TTCAATCGTG
ATCCTCGACG TGGGTCAACG TGGTTCAGCG GGTAAAGAAA TGCGCCCAAT GATCCGTCTG
GTTGGTGCCG ACGGTAGCGA CCTGATGATC CCAGGTACTG AAGTACCTGC ACAATACTTC
TTACCAGGCA GTGCGATCGT TAACCTCGAC GACAACGCGC AAATCGCCGT GGGTGACGCG
TTAGCACGTA TTCCACAAGA ATCGTCTAAA ACACGCGACA TCACGGGTGG TCTACCACGC
GTTGCTGACC TGTTCGAAGC TCGTAAGCCA AAAGAGCCAG CTATTCTGGC GGAAATCTCT
GGTACCATCT CGTTTGGTAA AGAGACCAAA GGCAAGCGTC GTCTGGTGAT TACACCAGCG
GATGGCGGTG AACAGTACGA AGAGATGATC CCGAAATGGC GTAACTTAAA CGTGTTCGAA
GGTGAAAAAG TCGAACGTGG TGAAGTTATT GCAGATGGTC CAGAAGCGGC GCACGACATT
CTGCGTCTAC GTGGCATCCA CAACGTAGCA AACTACATTG TGAACGAAGT ACAAGACGTA
TACCGTCTAC AAGGCGTGAA GATCAACGAT AAGCATATCG AAGTGATCAT CCGTCAAATG
CTGCGTAAGT GCGTGATCAC CTCTGCGGGT GACAGTGAGT TCTTAGAAGG CGAACAAGTT
GAAGTGTCTC GCGTGAAGAT CGCTAACCGC GACCTGATCG AACAAGGCAA AGTGCCTGCG
ACCTTCGAAC GTGAACTGCT GGGTATTACC AAAGCGTCTC TGGCAACAGA ATCGTTTATC
TCTGCAGCAT CGTTCCAAGA AACCACTCGC GTACTGACAG AAGCTGCCGT AGGTGGTAAG
TCTGATAACT TACGTGGTCT GAAAGAAAAC GTAATCGTTG GCCGTCTGAT CCCAGCCGGT
ACTGGTTATG CTTATCACAA GACTCGTAAC GATGCCCGTG CTAAGAAAGA CGAGCCAGTT
GTAGTGAATA AGATCACTGC AAGTGAAGCA GAACAAAACC TTGCAGACCT CTTAAACCTG
GCCGGTAGCC AAGATTAA
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| Protein sequence | MKDLLKFLKQ QSKTEEFNGI KIGLASPDLI RSWSFGEVKK PETINYRTFK PEREGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP VAHIWFLKSL
PSRIGLMLDM TLRDIERVLY FESFVVIEPG MTSLERGQML TEENYLDALE EYGDEFEAKM
GAEAVLELLR AIDLEKEIEQ MREELPSINS ETRRKKVTKR LKLMEAFHTS GNKPEWMILK
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKM VEREVAEVWD VLDEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPVI TPSQDVVLGL YYTSRERING RGEGMYFMSV AEVEKAYATG
AAELHARVKV RITETVIGDN GERTEQRRIV DTTVGRALLS QILPAGLSFD LVNQNMGKKQ
ISKLLNTCYR QLGLKDTVIF ADQLMYTGFR YATISGASVG IDDMVIPAEK YTLVADAEAE
VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMEN LSTETVINRD GVEEKQASFN
SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIV ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVI EDDCGTHEGL TMKPLIEGGD VVEPLRERVL
GRVVAVDVLY PGTEDVLAPR NTLLDEAWCD KLEEHSIDEV IVRSVITCDT DFGVCAACYG
RDLARGHLIN HGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV QVKNSGSLKL
HNAKYVTNTD GKLVIVSRSS ELAIIDELGR EKERYKVPYG TVLEKLEEAA VEAGDIIANW
DPHTHPIITE VAGSIKFVDM IDGVTMTRQT DELTGLSSIV ILDVGQRGSA GKEMRPMIRL
VGADGSDLMI PGTEVPAQYF LPGSAIVNLD DNAQIAVGDA LARIPQESSK TRDITGGLPR
VADLFEARKP KEPAILAEIS GTISFGKETK GKRRLVITPA DGGEQYEEMI PKWRNLNVFE
GEKVERGEVI ADGPEAAHDI LRLRGIHNVA NYIVNEVQDV YRLQGVKIND KHIEVIIRQM
LRKCVITSAG DSEFLEGEQV EVSRVKIANR DLIEQGKVPA TFERELLGIT KASLATESFI
SAASFQETTR VLTEAAVGGK SDNLRGLKEN VIVGRLIPAG TGYAYHKTRN DARAKKDEPV
VVNKITASEA EQNLADLLNL AGSQD
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