| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0192 |
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| Symbol | rpoB |
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| ID | 4477964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 230085 |
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| End bp | 234122 |
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| Gene Length | 4038 bp |
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| Protein Length | 1345 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639724721 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_867842 |
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| Protein GI | 117918650 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.409883 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000180599 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA GCGTCCACAG
GTGTTGGATA TTCCTTACCT TTTGTCTATT CAGTTAGACT CTTTTAAGAA GTTCACCGAT
CAAGATCCTA CCGGTGAGCG CGGTCTAGAA GCCGCCTTCC GTAGCGTTTT TCCCATCAAG
AGCTTTTCTG GTAATTCAGA ACTGCAATAC GTCAGCTATA AGCTTGGCGA GCCTGTTTTT
GATGTGAAAG AGTGTCAGAT CCGTGGTGTT ACATATTCAG CTCCACTGCG CGTTAAATTA
CGCATGGTGT TGTATGATCG TGAAGCAGCG GCCGGCACTG TAAAAGATAT TAAAGAACAA
GAAGTCTACA TGGGCGATAT CCCATTGATG ACTGACAACG GTACCTTTGT GATCAACGGT
ACTGAGCGTG TAATCGTATC TCAATTACAC CGCAGCCCAG GCGTATTCTT CGATCACGAC
CGTGGTAAAA CCCACTCATC AGGTAAGGTG CTGTATAACG CACGTATCAT TCCTTACCGT
GGTTCATGGT TAGACTTTGA ATTCGATCCT AAGGATGCGC TGTTCGTACG TATTGACCGT
CGCCGTAAAT TACCTGCGAC CATCATTCTG CGCGCATTAG AGTACTCTAC TCAAGAGATC
CTCGACCTGT TCTTCGAACG CGTTGAATTC AAGATCAAGA AAGATACTCT GGTTATGACC
TTAGTACCTG AGCGTCTGCG TGGCGAAACC GCCAGCTACG ACATCAAGGA TGCTGAAGGT
ACCGTATTGG TTGAAGCGGG CCGTCGCGTG ACTGCACGTC ATATTCGCCA ACTCGAAAAA
ACCAACACCA CTGAACTCGA AGTACCAGTT GAGTACATCG TGGGCAAATA TGCAGCCCAA
GATTACATCG ATCCGGACAC GGGTGAAGTA TTAGTTTCTG CTAACAGTGA AATCAGCTTA
GAAGACTTAG CGAAGTTATC ACTGGCAGGC ATCAAAGAGC TAAGCACGTT GTACATCAAC
GAGCTAGACC ACGGTGCTTA CATCTCTGAC ACTCTGCGTA TCGATCCAAC CACTAACCGC
TTAGAAGCGT TAGTTGAGAT CTACCGAATG ATGCGTCCTG GTGAGCCACC AACCAAAGAT
GCTGCAGAAG CCCTGTTCCA AAACTTATTC TTCAGCGAAG AACGTTATGA CCTGTCTAAA
GTAGGTCGTA TGAAGTTCAA CCGTCGTCTC AGCATTCCTG ATGACGAAGG TAGCGGCGTA
CTGTCTAAAG AAGACATCGT TGCAGTAATG AAGAACATCA TCCACATCCG TAACGGCTTC
GACGAAGTGG ACGATATCGA CCACTTAGGT AACCGTCGTA TTCGTTCTGT GGGTGAAATG
GCTGAAAACC AATTCCGTGT TGGTCTGGTC CGTGTTGAGC GCGCCGTGCG TGAACGTCTG
TCATTAGGCG ATCTGAACGA GCTGATGCCA CAAGACTTAA TCAACGCTAA GCCAATCTCT
GCTGCAGTGA AAGAGTTCTT CGGTTCTTCT CAGCTGTCAC AATTCATGGA CCAAAACAAC
CCGCTGTCAG AAGTAACGCA TAAGCGTCGT ATTTCTGCTC TAGGCCCAGG TGGTTTGACC
CGTGAGCGTG CAGGCTTCGA AGTCCGCGAC GTACACCCAA CGCACTATGG TCGTTTATGT
CCAATTGAGA CCCCTGAAGG TCCAAACATT GGTCTGATCA ACTCATTAGC AAGCTTTGCC
CGTACTAACT CTTACGGCTT CTTAGAAACA CCATACCGCA AAGTGGTAGA CGGTGTGATC
ACTGACGATG TGGAATACTT GTCAGCGATT GAAGAAGGTC GTTATGTGAT TGCACAGGCG
AACATCGAAG TTGACTCTGA AGGCCGCATG GTTGAAGAGC AGATCGCATG TCGTCACAAA
GGTGAATCTA CCTTTATGCG CGCGTCTGAC ATTCAATACA TGGACGTATC GCCACAACAG
ATTATTTCTG TTGCTGCGTC ACTGATCCCG TTCTTAGAAC ACGACGACGC GAACCGTGCA
TTGATGGGTG CGAACATGCA ACGTCAAGCA GTACCAACAC TGAAATCAGA GAAGCCTCTG
GTCGGTACTG GTATTGAGCG CACGTTAGCT GTGGACTCAG GCGTAGTAGT CGCCGCTAAA
CGTGGCGGTG TGATCGATTA CGTTGATGCG AGCCGTATCG TAGTTAAAGT AAATGAAGAC
GAGCTGCGCC CAGGCGAAGC CGGTATCGAC ATTTACAACC TGACTAAGTA CACCCGTTCT
AACCAAAACA CTTGTATCAA CCAACGTCCT TGCTGTTCTG TTGGTGAGCC AGTGGTTCGT
GGTGACGTGT TAGCAGACGG TCCGTCTACT GACTTAGGTG ACTTAGCCCT TGGCCAGAAC
ATGCGTATCG CGTTCATGCC TTGGAACGGT TACAACTTCG AAGACTCGAT CTTAATTTCT
GAGCGTGTTG CACAGGAAGA CCGTTTCACC ACTATCCACA TTCAAGAGCT GTCTTGTATC
GCTCGTGATA CCAAGCTGGG TAGCGAAGAA ATCACTGCTG ACATTCCAAA CGTAGGTGAA
TCTGCTCTGT CGAAACTCGA CGAGTCAGGT ATCGTTTACA TCGGTGCAGA AGTGAAGGGC
GGTGACATTC TGGTTGGTAA AGTGACGCCA AAAGGCGAGA CTCAACTGAC GCCGGAAGAG
AAGTTACTGC GCGCCATCTT CGGTGAGAAA GCGTCTGATG TGAAAGACAG CTCACTGCGT
GTACCTAACT CTGTTAAAGG TACCATCATC GACGTTCAGG TATTTACCCG TGACGGCGTT
GAGAAAGACA AACGCGCCAT TGAAATCGAA GAAATGCACA TTGCCCAAGC TCGTAAAGAC
TTAGGCGAAG AGTTCAAGAT CCTTGAAGAA GGCGTATTGA GCCGTGCGCG CAACTTATTA
TTAAGTGCCG GTTTCACTGA AGCACAAATC GCAGCATTGC CACGTAAAGA TGTATTGGTT
CAAGTTATTG ACGATGAAAC CAAACAAACT GAGCTTGAGC AATTAGCTGA ACAGCATGAA
GAGCTGAAAG CAGACTTCGA TAAGAAGTTT GAAATCAAAC GTCGCAAGAT CACCCAAGGT
GATGACTTGG CACCTGGCGT ACTGAAGATC GTTAAGGTTT ACTTAGCGGT TAAACGTACT
ATCCAACCCG GTGACAAGAT GGCGGGTCGT CACGGTAACA AGGGTGTTAT CTCTAAGATT
AACCCAATTG AAGACATGCC GTACGACGAG CAAGGCAACC CTGTGGACAT CGTATTGAAC
CCGTTAGGCG TTCCATCACG TATGAACATC GGTCAGGTTC TTGAAGTTCA CTTAGGTGCT
GCTGCTAAAG GTATTGGTAA CAAGATTGCT GCCATGCTGG AAGATCAGCG CGAGAAGGGA
CTTGCAGAAG TTCGTAACTA CATCAAGCAA GTGTACGAAT TAGGTGACGA AGTGCAGCAG
CGCGTTGACA TCGATTCATT CACTGACGAT GAGTTACTGC GGTTAGCGAA CAATCTGAAA
GGCGGTATCC CAGTTGCTAC GCCAGCCTTC GACGGTGCTA AAGAGAAAGA GATCAAGCAG
ATGCTTGAGC TTGCAGGCTT GCCAACCTCT GGTCAGCTGA AATTATTTGA TGGTCGTACC
GGTAACGAAT TTGAGCGTCC AGTAACTGTA GGTTACATGT ACATGCTCAA ACTGAACCAC
TTAGTTGACG ATAAGATGCA CGCCCGTTCT ACCGGTTCGT ACAGCTTAGT GACTCAACAA
CCACTGGGCG GTAAAGCTCA GTTCGGTGGT CAGCGTTTCG GTGAGATGGA AGTGTGGGCA
CTCGAAGCAT ACGGTGCCGC TTATACGCTT CAAGAAATGC TCACCGTGAA ATCGGATGAC
GTTAACGGTC GTACTCAGAT GTATAAGAAC ATCGTCGACG GTAACCATCA GATGCAGCCT
GGCATGCCAG AGTCCTTCAA CGTATTACTG AAGGAGATCC GTTCACTCGG TATCAACATC
GAGTTGGATC AGGAATAA
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| Protein sequence | MVYSYSEKKR IRKDFGKRPQ VLDIPYLLSI QLDSFKKFTD QDPTGERGLE AAFRSVFPIK
SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLYDREAA AGTVKDIKEQ
EVYMGDIPLM TDNGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDALFVRIDR RRKLPATIIL RALEYSTQEI LDLFFERVEF KIKKDTLVMT
LVPERLRGET ASYDIKDAEG TVLVEAGRRV TARHIRQLEK TNTTELEVPV EYIVGKYAAQ
DYIDPDTGEV LVSANSEISL EDLAKLSLAG IKELSTLYIN ELDHGAYISD TLRIDPTTNR
LEALVEIYRM MRPGEPPTKD AAEALFQNLF FSEERYDLSK VGRMKFNRRL SIPDDEGSGV
LSKEDIVAVM KNIIHIRNGF DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL
SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLASFA RTNSYGFLET PYRKVVDGVI
TDDVEYLSAI EEGRYVIAQA NIEVDSEGRM VEEQIACRHK GESTFMRASD IQYMDVSPQQ
IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLKSEKPL VGTGIERTLA VDSGVVVAAK
RGGVIDYVDA SRIVVKVNED ELRPGEAGID IYNLTKYTRS NQNTCINQRP CCSVGEPVVR
GDVLADGPST DLGDLALGQN MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI
ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRAIEIE EMHIAQARKD
LGEEFKILEE GVLSRARNLL LSAGFTEAQI AALPRKDVLV QVIDDETKQT ELEQLAEQHE
ELKADFDKKF EIKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI
NPIEDMPYDE QGNPVDIVLN PLGVPSRMNI GQVLEVHLGA AAKGIGNKIA AMLEDQREKG
LAEVRNYIKQ VYELGDEVQQ RVDIDSFTDD ELLRLANNLK GGIPVATPAF DGAKEKEIKQ
MLELAGLPTS GQLKLFDGRT GNEFERPVTV GYMYMLKLNH LVDDKMHARS TGSYSLVTQQ
PLGGKAQFGG QRFGEMEVWA LEAYGAAYTL QEMLTVKSDD VNGRTQMYKN IVDGNHQMQP
GMPESFNVLL KEIRSLGINI ELDQE
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