| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0189 |
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| Symbol | rplA |
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| ID | 4477961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 227947 |
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| End bp | 228648 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 639724718 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_867839 |
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| Protein GI | 117918647 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000324353 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00207422 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCAAAAC TAACTAAACG CATGCGCGTA ATCCGCGAGA AAGTTGACGG TACTAAGTTA
TACGAAATCA ACGACGCTGT TGCTCTGTTA AAAGAATTAG CAACTGCTAA GTTCGTTGAA
AGTGTTGACG TTGCTGTTAA CCTGGGTATC GACCCACGTA AATCAGACCA AAACGTTCGT
GGTGCTACTG TATTACCACA CGGTACTGGT CGTGAAGTTC GCGTTGCAGT ATTTACACAA
GGTGCAAATG CTGAAGCTGC AAAAGCTGCT GGTGCAGAAC TCGTTGGTAT GGATGATCTG
GCTGAGCAAA TCAAAGCCGG TGAAATGAAC TTCGACGTAG TTATCGCATC TCCAGATGCA
ATGCGCGTTG TTGGTATGTT AGGTCAAATC TTAGGCCCAC GTGGTTTAAT GCCTAACCCA
AAAACTGGCA CAGTAACGCC AAACGTTGCT GAAGCCGTTA AGAACGCTAA AGCTGGTCAA
GTTCGTTACC GTAACGACAA GAACGGTATT ATCCACACTA CTATCGGTAA AGTGGATTTC
ACACCAGTTC AATTGAAAGA AAACTTGGAA GCGTTAATCT CTGCACTGAA AAAGGCTAAG
CCTGCAGTTG CTAAAGGTGT ATACGTGAAG AAAGTTAGCA TCTCTACCAC TATGGGTGCA
GGTGTAGCTA TCGACCAAGC GACTCTCGAT ACAGCTAACT AA
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| Protein sequence | MAKLTKRMRV IREKVDGTKL YEINDAVALL KELATAKFVE SVDVAVNLGI DPRKSDQNVR
GATVLPHGTG REVRVAVFTQ GANAEAAKAA GAELVGMDDL AEQIKAGEMN FDVVIASPDA
MRVVGMLGQI LGPRGLMPNP KTGTVTPNVA EAVKNAKAGQ VRYRNDKNGI IHTTIGKVDF
TPVQLKENLE ALISALKKAK PAVAKGVYVK KVSISTTMGA GVAIDQATLD TAN
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