| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0152 |
|---|
| Symbol | |
|---|
| ID | 4478289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 177108 |
|---|
| End bp | 178673 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639724672 |
|---|
| Product | type II secretion system protein E (GspE) |
|---|
| Protein accession | YP_867802 |
|---|
| Protein GI | 117918610 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.203719 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAA TACAAGTAAC CCAAGTCGAG GATTTAAGCC TAGTTTCTAA CGAACTAGGG
CTTGAAGCCG AAGGTGATGA GGTATTTCGC TCCAGCAGCA AAGAGCGTTT ACCCTTTGCC
TTTGCCCATC GCCATGAGGT GATTTTAGCC TATGGCGATG ATGGTGCCTT GAACCTGTTT
TATACCGCCA AAACCCCATT AGCAGCCATG CTCGAAGCGC GCCGCTACTC GGGCGCGGAT
TTGCCGCTGG TCTTGCTCGA GCCGGGCAAG TTTGAGGCGA AATTAACCCA GGCCTATCAA
GCCAACTCCT CCGAAGCGCA GCAGCTGATG GAAGATATTG GCAACGAGAT GGATTTATTC
ACCCTCGCCG AAGAGCTGCC GCAAACCGAA GATCTGCTCG AAGGCGATGA TGATGCGCCT
ATTATCAAGC TGATTAACGC CTTGTTATCT GAAGCGATTA AAGAAGAAGC CTCGGATATC
CATATCGAAA CCTACGAGAA GCAGTTGGTC GTGCGTTTCC GTATCGACGG TGTGCTGAAG
GAAGTGCTTA AACCGAATCG TAAGCTGTCA TCCCTTTTGG TGTCGCGGAT TAAGGTCATG
GCGCGTCTCG ATATCGCCGA GAAACGTGTA CCACAGGACG GCCGTATTTC GCTGCGGATT
GCGGGTCGTG CGGTGGACGT GCGGGTATCG ACCATGCCAT CGAGCCATGG CGAGCGTGTG
GTGCTGCGTC TGTTAGATAA AAACGCTGGC AATTTGGACT TAAAACAACT GGGGATGACC
GACAGTATCC GTGCCCAGTT TGACGAGATT ATCCGTCGTC CACACGGCAT TATTCTGGTG
ACAGGCCCTA CGGGTTCGGG TAAGAGTACC ACGCTGTACG CGGGTCTTAC CGAGATTAAC
TCTAAAGATA CCAATATCTT AACCGTTGAA GACCCGATCG AATACGAGTT AGAAGGTATA
GGTCAAACTC AAGTGAACAC TAAGGCGGAC ATGACCTTCG CCCGTGGTCT GCGTGCGATT
CTGCGTCAAG ACCCGGATGT GGTGATGATC GGGGAAATCC GTGACCTAGA AACCGCCCAA
ATTGCGGTGC AGGCATCTTT GACTGGTCAC TTAGTGATTT CAACCCTGCA TACCAACACG
GCCTCTGGCG CGATTACCCG TTTGCAGGAT ATGGGCGTAG AGCCTTTCTT AGTCTCATCG
AGTTTGCTCG GGGTACTAGC CCAGCGCTTA ATTCGTACTC TCTGTCCAAA ATGTAAGACA
GAGCATGTGC CCGATGAGCG TGAGCGTGAG CTGCTGGGAA TGGCAGCAGA CGATCATCGC
CATATTTACC GCGCCAATGG CTGTAAGGCC TGTGGTAGCA GTGGCTACCG TGGTCGTACG
GGTATCCATG AGCTGTTGCT GGTCGATGAT AATGTGCGCG AGCTGATCCA CGGTGGACGT
GGCGAACTGG CGATTGAGAA ATATATCCGC CAGTCGGTGC CAAGCATTCG CCACGATGGC
ATGAGCAAGG TGCTCTCAGG TATCACCACT CTAGAAGAAG TCCTGAGGGT GACCCGCGAG
GAGTAA
|
|---|
| Protein sequence | MSEIQVTQVE DLSLVSNELG LEAEGDEVFR SSSKERLPFA FAHRHEVILA YGDDGALNLF
YTAKTPLAAM LEARRYSGAD LPLVLLEPGK FEAKLTQAYQ ANSSEAQQLM EDIGNEMDLF
TLAEELPQTE DLLEGDDDAP IIKLINALLS EAIKEEASDI HIETYEKQLV VRFRIDGVLK
EVLKPNRKLS SLLVSRIKVM ARLDIAEKRV PQDGRISLRI AGRAVDVRVS TMPSSHGERV
VLRLLDKNAG NLDLKQLGMT DSIRAQFDEI IRRPHGIILV TGPTGSGKST TLYAGLTEIN
SKDTNILTVE DPIEYELEGI GQTQVNTKAD MTFARGLRAI LRQDPDVVMI GEIRDLETAQ
IAVQASLTGH LVISTLHTNT ASGAITRLQD MGVEPFLVSS SLLGVLAQRL IRTLCPKCKT
EHVPDERERE LLGMAADDHR HIYRANGCKA CGSSGYRGRT GIHELLLVDD NVRELIHGGR
GELAIEKYIR QSVPSIRHDG MSKVLSGITT LEEVLRVTRE E
|
|---|
| |