| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0133 |
|---|
| Symbol | |
|---|
| ID | 4477282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 148465 |
|---|
| End bp | 151698 |
|---|
| Gene Length | 3234 bp |
|---|
| Protein Length | 1077 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639724653 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_867783 |
|---|
| Protein GI | 117918591 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0355057 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCCA CGCTACAGCA TCTCAGCCTG AAGCAGAAGT TGATTCTGTT TTCACTGCTA
CCTTTGCTGA TGATGAGTAT TTTTGTGTTG TCGCGGATGT ATGTGCTGGT GAAGGAATAT
CGCTCCGCCA ATCAGAACCA TCTGGCAATC CAAGCGACCG CCCAAACCAC CGAACTACTC
TACCAACTGC ATAACGAATA CGGCCTCAGC GTCCAGCTTT CTGCCCCCGG TTCCCCCCAA
GAAGAAACAC GCCTGCTACA GCAACAACAG ATAACCTCAG ACGCCTTAGA TACCCTGCTC
AATGGCTCAG CCTTAAGCGC TTTAATGTCT GCCTTGGGTC GCAATCAACT CGCCGCCGCG
CAGTTGCAGG AGCAGCTCAA TACCCTAACC CTGTTAAGTC ATAGGCTAGC ATCGGGGCAC
CAAGAGGCAC TCGACCAACA TCCTAAGGCC TTTATCGATT TGTATAACCA GTTCAACACG
GAATTGGTCA AACTTATCCA GCAATTACAG TTACAAACCA ACGATATTGC GCAATCTCGC
GCCTACACGG ATTTGCTTAA CTTATTGATG GTGCAACAAC TGGCGGTAAA AGAGCGTAGT
GCGATTAATC GAATGCTGCT GTCGCAAACG CTGAACATTA ACGACTACCG CGCGATCAGC
ACTATCATGT ATGAATATGG CCAAGCCATA GAACATGCCA GCAACGCCTC GATTTCTGAC
CGTCAGTCCT TAATCCGCAA GGTGCAAACC TCCCCCGAGA ATCTGCGCAT CCTCAAGATT
AGCCAACAAA TAGAGCAACA AATCCGCGTC AGTACCTTAG TGCAAAATAT TAATGCTCAT
TTAGGCTACG GTGGCTTGAT TGACAGTTTT CAGGATTACC TCATCAAGGG CGATGCTGCC
TCGCTAGAGA AATTTACTAA GGCGCAGGCA ATTATCCAGC TGAATCTCGA TGAACTAAAT
CATGAAATCC GCAATATTCC CGAGCTCAAA GCGGCGGTCA GGACGATTGA AGACAGTGTC
GATCAATATC AATTCTGCAT GTCTAAACTG CAACAGTTGA AGCAACAGCA ACTGTCACTC
GAAGAAATCA CCGCCCTCGC CCAAGTCAAT GATAGCGGTC TGAGCGAGGC CATAGACAAG
CTGTTAATGC CACCGCATCC CGTCAGCAGT AAGCACTGGT GGTCACTCAC CAGCGATAGG
ATCAATAAGT TGCACGCCAT CAGTGATGAA ATCACCGAAA AAATGGCGCA TCAGAGTGAG
GTTGAGCAGA CTAAGTCACT CAGTTTGCTC GGGTTATATC TATTCTCCGC GATTTTTACC
GCGGCAATTA CCCTCTGGCT CGGGCGCAAA ATCATCCGCA GCTTTATGGT CAAAATCACT
AAGATTGCCA ATGATATGCA GCAAATGGCC GCCGATCCGC AGCTCAATAT CAATATCGAT
GCCTCTGGCA CCGACGAGCT GGCCCGCATG GCACAAGCCA TGAATCGGAT GATCAGCGAG
CGCCAAAAGG CCAACCATGC CCTAAGCCGC GCCGCCGCCG TATTTAACTA TTCCGCCGAA
GGCATTATGG TCACGGATGC CGATAACCAT ATCGAGTTGA TTAACCCGGC CTTTAGCCAG
ATCACCGGCT ATAGCCTCGA AGAGGTGAAG GGCCGCAGCC CCTCGATTTT AAGCTCGAAT
CGCCACCCGC ATCATTACTA CACCGCCATG TGGGAAGCGC TGCATAAAGA GGGCAAATGG
GAAGGCGAAA TCTGGAATAA ACGCAAAGAT GGCCAAGTGT ATCCCGAGTA CCTCGCCATT
ACTGTGGTGC GTAATGAACA GGGCGAAATA ATCCAACATA TTGGTTTATT TATGGATATC
AGTAAGCGCA AGCAATACGA ACAAGACCTC TGGTATCAGG CAAACTTCGA CACCTTAACA
GGTCTCCCCA ACCGTAAGTT GTTTAACGAG CGCCTGCAGC ATGAAATCCA ACTCGCCCAA
CACGACTCCC GTAAGCTGGC GATTCTGCTG ATCGACCTAG ACCAATTCAA ATATATCAAT
GATGTGCAGG GCCATGCGAC GGGCGATCTC CTGTTGCAAG ACGTGGCTAA GCGGCTTGAA
AATATTGCCG GTAAGAACGA CTTTGTCGCC CGCATCGGTG GCGACGAATT TGTGCTTATT
CTCCCCCGCG TTACCAATGA GTTCGCGATT GAGCATATGG CGAGCCGGAT CATTGAAACC
TTAGCCACGC CCTTTAACTT AAATGAGCGG GAAATCCAGA TCTCGGCCAG CTTCGGCATC
GGCGTCTACC CCGAGGACGG GCTAGATGTG AGTTCGCTGA CCCGCAATAC CGAGATGGCC
ATGTATCAGG CCAAAGATGC TGGGCGTAAT AACTTTAAGT ACTTTACCTC CGGCATGAAT
CAAGCCATGT TTGCCCGCAT GGAGCTGGAA CAACGACTGC GCCGCGCCGT GGCACAGGAT
GAATTTACCC TCTTTTATCA ACCGATTGTC GATATGAAGA CGGGACAAAT CTGCAGCGTT
GAGGCACTGA TCCGCTGGCA AGATCCCGAC TTAGGACTGA TCCCACCAGA CCAATTTATC
GCTATCGCCG AGGAGACAGG GCTTATCGAA CCTATGGGCG AATGGGTGCT CAACCAAGCC
ATGCACGATT TAAGACAATG GCAGCATATG GGACTCAACC TGAATGTCGC CATCAATGTT
TCTAGCCGTC AGTGCATTAA TACCCGTGGT ATCGGCTTCG ACCAAGTGTT ACAGGAATGC
TTTAACCGTC ACCATATCAA TCCTAGAAAC GTGCATATCG AGATCACCGA GAGCATGCTG
ATGGGCGATG CCAGCCACTG CTTAAGCACC CTCGAATCAA TCCGCCACTT AGGCTCGCAG
ATTTATATCG ATGACTTTGG CACTGGCTAT TCATCATTGA GTTATTTGAA GAAATTCCCA
ATTTCGGTCA TCAAGATTGA CCGCAGCTTT GTCGAGCACG CCCTCGAAAA CTGTTCTAAC
GCCAATCTGG TCAAGGCCAT TGTGATGATG GGGCAAAGTC TTGAGATGGA ACTTGTCGCC
GAAGGAATCG AAACCGAGGC CCAATGGCAG TTTTTGCGTG ACTTAGGCTG CCACTATGCA
CAAGGCTATT TACTTTCGAA ACCGCTGCCA TTCGATGAAA TAACCCCATT ACTCGGCCAG
ACCTTGCCGA AAATGTTGCA TTTAGAGCAG CGAGAGAAAT GCGTAAACAG TTGA
|
|---|
| Protein sequence | MPSTLQHLSL KQKLILFSLL PLLMMSIFVL SRMYVLVKEY RSANQNHLAI QATAQTTELL
YQLHNEYGLS VQLSAPGSPQ EETRLLQQQQ ITSDALDTLL NGSALSALMS ALGRNQLAAA
QLQEQLNTLT LLSHRLASGH QEALDQHPKA FIDLYNQFNT ELVKLIQQLQ LQTNDIAQSR
AYTDLLNLLM VQQLAVKERS AINRMLLSQT LNINDYRAIS TIMYEYGQAI EHASNASISD
RQSLIRKVQT SPENLRILKI SQQIEQQIRV STLVQNINAH LGYGGLIDSF QDYLIKGDAA
SLEKFTKAQA IIQLNLDELN HEIRNIPELK AAVRTIEDSV DQYQFCMSKL QQLKQQQLSL
EEITALAQVN DSGLSEAIDK LLMPPHPVSS KHWWSLTSDR INKLHAISDE ITEKMAHQSE
VEQTKSLSLL GLYLFSAIFT AAITLWLGRK IIRSFMVKIT KIANDMQQMA ADPQLNINID
ASGTDELARM AQAMNRMISE RQKANHALSR AAAVFNYSAE GIMVTDADNH IELINPAFSQ
ITGYSLEEVK GRSPSILSSN RHPHHYYTAM WEALHKEGKW EGEIWNKRKD GQVYPEYLAI
TVVRNEQGEI IQHIGLFMDI SKRKQYEQDL WYQANFDTLT GLPNRKLFNE RLQHEIQLAQ
HDSRKLAILL IDLDQFKYIN DVQGHATGDL LLQDVAKRLE NIAGKNDFVA RIGGDEFVLI
LPRVTNEFAI EHMASRIIET LATPFNLNER EIQISASFGI GVYPEDGLDV SSLTRNTEMA
MYQAKDAGRN NFKYFTSGMN QAMFARMELE QRLRRAVAQD EFTLFYQPIV DMKTGQICSV
EALIRWQDPD LGLIPPDQFI AIAEETGLIE PMGEWVLNQA MHDLRQWQHM GLNLNVAINV
SSRQCINTRG IGFDQVLQEC FNRHHINPRN VHIEITESML MGDASHCLST LESIRHLGSQ
IYIDDFGTGY SSLSYLKKFP ISVIKIDRSF VEHALENCSN ANLVKAIVMM GQSLEMELVA
EGIETEAQWQ FLRDLGCHYA QGYLLSKPLP FDEITPLLGQ TLPKMLHLEQ REKCVNS
|
|---|
| |