Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0133 |
Symbol | |
ID | 4477282 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 148465 |
End bp | 151698 |
Gene Length | 3234 bp |
Protein Length | 1077 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639724653 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_867783 |
Protein GI | 117918591 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0355057 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCATCCA CGCTACAGCA TCTCAGCCTG AAGCAGAAGT TGATTCTGTT TTCACTGCTA CCTTTGCTGA TGATGAGTAT TTTTGTGTTG TCGCGGATGT ATGTGCTGGT GAAGGAATAT CGCTCCGCCA ATCAGAACCA TCTGGCAATC CAAGCGACCG CCCAAACCAC CGAACTACTC TACCAACTGC ATAACGAATA CGGCCTCAGC GTCCAGCTTT CTGCCCCCGG TTCCCCCCAA GAAGAAACAC GCCTGCTACA GCAACAACAG ATAACCTCAG ACGCCTTAGA TACCCTGCTC AATGGCTCAG CCTTAAGCGC TTTAATGTCT GCCTTGGGTC GCAATCAACT CGCCGCCGCG CAGTTGCAGG AGCAGCTCAA TACCCTAACC CTGTTAAGTC ATAGGCTAGC ATCGGGGCAC CAAGAGGCAC TCGACCAACA TCCTAAGGCC TTTATCGATT TGTATAACCA GTTCAACACG GAATTGGTCA AACTTATCCA GCAATTACAG TTACAAACCA ACGATATTGC GCAATCTCGC GCCTACACGG ATTTGCTTAA CTTATTGATG GTGCAACAAC TGGCGGTAAA AGAGCGTAGT GCGATTAATC GAATGCTGCT GTCGCAAACG CTGAACATTA ACGACTACCG CGCGATCAGC ACTATCATGT ATGAATATGG CCAAGCCATA GAACATGCCA GCAACGCCTC GATTTCTGAC CGTCAGTCCT TAATCCGCAA GGTGCAAACC TCCCCCGAGA ATCTGCGCAT CCTCAAGATT AGCCAACAAA TAGAGCAACA AATCCGCGTC AGTACCTTAG TGCAAAATAT TAATGCTCAT TTAGGCTACG GTGGCTTGAT TGACAGTTTT CAGGATTACC TCATCAAGGG CGATGCTGCC TCGCTAGAGA AATTTACTAA GGCGCAGGCA ATTATCCAGC TGAATCTCGA TGAACTAAAT CATGAAATCC GCAATATTCC CGAGCTCAAA GCGGCGGTCA GGACGATTGA AGACAGTGTC GATCAATATC AATTCTGCAT GTCTAAACTG CAACAGTTGA AGCAACAGCA ACTGTCACTC GAAGAAATCA CCGCCCTCGC CCAAGTCAAT GATAGCGGTC TGAGCGAGGC CATAGACAAG CTGTTAATGC CACCGCATCC CGTCAGCAGT AAGCACTGGT GGTCACTCAC CAGCGATAGG ATCAATAAGT TGCACGCCAT CAGTGATGAA ATCACCGAAA AAATGGCGCA TCAGAGTGAG GTTGAGCAGA CTAAGTCACT CAGTTTGCTC GGGTTATATC TATTCTCCGC GATTTTTACC GCGGCAATTA CCCTCTGGCT CGGGCGCAAA ATCATCCGCA GCTTTATGGT CAAAATCACT AAGATTGCCA ATGATATGCA GCAAATGGCC GCCGATCCGC AGCTCAATAT CAATATCGAT GCCTCTGGCA CCGACGAGCT GGCCCGCATG GCACAAGCCA TGAATCGGAT GATCAGCGAG CGCCAAAAGG CCAACCATGC CCTAAGCCGC GCCGCCGCCG TATTTAACTA TTCCGCCGAA GGCATTATGG TCACGGATGC CGATAACCAT ATCGAGTTGA TTAACCCGGC CTTTAGCCAG ATCACCGGCT ATAGCCTCGA AGAGGTGAAG GGCCGCAGCC CCTCGATTTT AAGCTCGAAT CGCCACCCGC ATCATTACTA CACCGCCATG TGGGAAGCGC TGCATAAAGA GGGCAAATGG GAAGGCGAAA TCTGGAATAA ACGCAAAGAT GGCCAAGTGT ATCCCGAGTA CCTCGCCATT ACTGTGGTGC GTAATGAACA GGGCGAAATA ATCCAACATA TTGGTTTATT TATGGATATC AGTAAGCGCA AGCAATACGA ACAAGACCTC TGGTATCAGG CAAACTTCGA CACCTTAACA GGTCTCCCCA ACCGTAAGTT GTTTAACGAG CGCCTGCAGC ATGAAATCCA ACTCGCCCAA CACGACTCCC GTAAGCTGGC GATTCTGCTG ATCGACCTAG ACCAATTCAA ATATATCAAT GATGTGCAGG GCCATGCGAC GGGCGATCTC CTGTTGCAAG ACGTGGCTAA GCGGCTTGAA AATATTGCCG GTAAGAACGA CTTTGTCGCC CGCATCGGTG GCGACGAATT TGTGCTTATT CTCCCCCGCG TTACCAATGA GTTCGCGATT GAGCATATGG CGAGCCGGAT CATTGAAACC TTAGCCACGC CCTTTAACTT AAATGAGCGG GAAATCCAGA TCTCGGCCAG CTTCGGCATC GGCGTCTACC CCGAGGACGG GCTAGATGTG AGTTCGCTGA CCCGCAATAC CGAGATGGCC ATGTATCAGG CCAAAGATGC TGGGCGTAAT AACTTTAAGT ACTTTACCTC CGGCATGAAT CAAGCCATGT TTGCCCGCAT GGAGCTGGAA CAACGACTGC GCCGCGCCGT GGCACAGGAT GAATTTACCC TCTTTTATCA ACCGATTGTC GATATGAAGA CGGGACAAAT CTGCAGCGTT GAGGCACTGA TCCGCTGGCA AGATCCCGAC TTAGGACTGA TCCCACCAGA CCAATTTATC GCTATCGCCG AGGAGACAGG GCTTATCGAA CCTATGGGCG AATGGGTGCT CAACCAAGCC ATGCACGATT TAAGACAATG GCAGCATATG GGACTCAACC TGAATGTCGC CATCAATGTT TCTAGCCGTC AGTGCATTAA TACCCGTGGT ATCGGCTTCG ACCAAGTGTT ACAGGAATGC TTTAACCGTC ACCATATCAA TCCTAGAAAC GTGCATATCG AGATCACCGA GAGCATGCTG ATGGGCGATG CCAGCCACTG CTTAAGCACC CTCGAATCAA TCCGCCACTT AGGCTCGCAG ATTTATATCG ATGACTTTGG CACTGGCTAT TCATCATTGA GTTATTTGAA GAAATTCCCA ATTTCGGTCA TCAAGATTGA CCGCAGCTTT GTCGAGCACG CCCTCGAAAA CTGTTCTAAC GCCAATCTGG TCAAGGCCAT TGTGATGATG GGGCAAAGTC TTGAGATGGA ACTTGTCGCC GAAGGAATCG AAACCGAGGC CCAATGGCAG TTTTTGCGTG ACTTAGGCTG CCACTATGCA CAAGGCTATT TACTTTCGAA ACCGCTGCCA TTCGATGAAA TAACCCCATT ACTCGGCCAG ACCTTGCCGA AAATGTTGCA TTTAGAGCAG CGAGAGAAAT GCGTAAACAG TTGA
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Protein sequence | MPSTLQHLSL KQKLILFSLL PLLMMSIFVL SRMYVLVKEY RSANQNHLAI QATAQTTELL YQLHNEYGLS VQLSAPGSPQ EETRLLQQQQ ITSDALDTLL NGSALSALMS ALGRNQLAAA QLQEQLNTLT LLSHRLASGH QEALDQHPKA FIDLYNQFNT ELVKLIQQLQ LQTNDIAQSR AYTDLLNLLM VQQLAVKERS AINRMLLSQT LNINDYRAIS TIMYEYGQAI EHASNASISD RQSLIRKVQT SPENLRILKI SQQIEQQIRV STLVQNINAH LGYGGLIDSF QDYLIKGDAA SLEKFTKAQA IIQLNLDELN HEIRNIPELK AAVRTIEDSV DQYQFCMSKL QQLKQQQLSL EEITALAQVN DSGLSEAIDK LLMPPHPVSS KHWWSLTSDR INKLHAISDE ITEKMAHQSE VEQTKSLSLL GLYLFSAIFT AAITLWLGRK IIRSFMVKIT KIANDMQQMA ADPQLNINID ASGTDELARM AQAMNRMISE RQKANHALSR AAAVFNYSAE GIMVTDADNH IELINPAFSQ ITGYSLEEVK GRSPSILSSN RHPHHYYTAM WEALHKEGKW EGEIWNKRKD GQVYPEYLAI TVVRNEQGEI IQHIGLFMDI SKRKQYEQDL WYQANFDTLT GLPNRKLFNE RLQHEIQLAQ HDSRKLAILL IDLDQFKYIN DVQGHATGDL LLQDVAKRLE NIAGKNDFVA RIGGDEFVLI LPRVTNEFAI EHMASRIIET LATPFNLNER EIQISASFGI GVYPEDGLDV SSLTRNTEMA MYQAKDAGRN NFKYFTSGMN QAMFARMELE QRLRRAVAQD EFTLFYQPIV DMKTGQICSV EALIRWQDPD LGLIPPDQFI AIAEETGLIE PMGEWVLNQA MHDLRQWQHM GLNLNVAINV SSRQCINTRG IGFDQVLQEC FNRHHINPRN VHIEITESML MGDASHCLST LESIRHLGSQ IYIDDFGTGY SSLSYLKKFP ISVIKIDRSF VEHALENCSN ANLVKAIVMM GQSLEMELVA EGIETEAQWQ FLRDLGCHYA QGYLLSKPLP FDEITPLLGQ TLPKMLHLEQ REKCVNS
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