Gene Shewana3_0106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0106 
Symbol 
ID4477254 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp121113 
End bp122543 
Gene Length1431 bp 
Protein Length476 aa 
Translation table11 
GC content56% 
IMG OID639724625 
Productselenocysteine synthase 
Protein accessionYP_867756 
Protein GI117918564 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1921] Selenocysteine synthase [seryl-tRNASer selenium transferase] 
TIGRFAM ID[TIGR00474] seryl-tRNA(sec) selenium transferase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATACAAA TGATGACCCA AGTACCCGAT ACACCCCAAG CCCTGTACCG CGCGCTGCCG 
TCGATGGACA GTCTGCTCGC CGATGCAATA TTGGCGCCCC TGCTGCAAAG CTATGGTAAA
GCGGCGGTAA AGGCGGCGCT GGATAGCCAG TTACGCACGG CGCGTGAGCT GATAGCTCAG
GAGCGACGTT TACCCGCTTG GTGTGCTAAC CCGTCATTAT TGAACGGATA TTTGGTTGAT
CAATTGTCTA AGGACTATAG CCATAGTCTT AAGCCCGTGT GGAACCTCAC GGGAACTATC
CTGCATACCA ATCTTGGTCG CGCCCAGCAG TCTGAGGCGG CCATTCGGGC GGTGACCTCT
GTGATGCGTT ATCCCACGCC GCTGGAATTT GAGTTGGCAG CGGGTGAACG CGGCCATCGG
GATAATGCCA TTAGTGGGTT AATCCAGCGC TTAACAGGAG CTGAGGCCTG CTGCGTGGTG
AATAACAACG CCGCTGCTGT GTTGCTGATG TTGTCGGCGG TGGCGGCGGG TAAAGAAGTG
ATTGTCTCCC GCGGCGAGCT GGTGGAAATC GGCGGCGCCT TTCGTATTCC TGACATTATG
CGCCAAGCGG GCTGTATCTT AGTGGAAGTT GGCAGCACTA ATCGTACTCA CCTTAAGGAC
TATGAGCAGG CGATCACCGA AAATACCGCC GCCATCATGA AGGTGCACAC CAGCAACTAC
CATATCAGTG GCTTTACCGC TTCGGTGGAT GAGGCCAGAT TAGGCCAACT CTGCCGCGAG
CGTGGGGTCG CGCTGATTTC GGATCTTGGC AGTGGTTCAC TCACCGACTT ACGCCGTTTT
GGCCTGAAAC AAGAGCCGAC TCCCCAAGCC ATGCTGGCGG ATGGGGTCGA TCTGGTTAGC
TTCTCCGGCG ATAAACTCCT TGGCGGCCCG CAATCGGGTT TGATTGTCGG CAAACAGGCG
CTGATCAACA AACTTCAAAG TCATCCGCTC AAGCGTGCAT TGCGCTGCGA CAAGCTGATT
CTCGCGGCGC TCGAGGCGAC GCTGATCCAC TATTTGAACC CCGAAACCTT GGATCGGGAA
CTGCCGATTA TGGCTAAATT TGCCCGCAGC CAAGCTGAGT TACGTCAAAT CGGTGAGCGT
CTGCAGCGCG CCTTAGAGCC GCTGTTTGCA CCGAGTTATG GCATCGAGCT AGTGGAGTGC
CAAACCCAAG TCGGTAGCGG CTCGCAGCCC GATACCTTTT TGCCCTCAAT CGCCCTGTGC
TTTAACGCGC AAGAGGGCGG CAGTTTAACG TTGCTCGAGC AGCATTTTAA GCAGGCGCAG
CGCCCTGTGA TTGGCCGTAT GACCCAAGAT CAACTTCGCC TCGATCTGCG CGGTATCGAT
GATGAGGCCG AGTTGTTAGC CGAACTCAGC ACCTTAGGTG TGCAGCTATG A
 
Protein sequence
MIQMMTQVPD TPQALYRALP SMDSLLADAI LAPLLQSYGK AAVKAALDSQ LRTARELIAQ 
ERRLPAWCAN PSLLNGYLVD QLSKDYSHSL KPVWNLTGTI LHTNLGRAQQ SEAAIRAVTS
VMRYPTPLEF ELAAGERGHR DNAISGLIQR LTGAEACCVV NNNAAAVLLM LSAVAAGKEV
IVSRGELVEI GGAFRIPDIM RQAGCILVEV GSTNRTHLKD YEQAITENTA AIMKVHTSNY
HISGFTASVD EARLGQLCRE RGVALISDLG SGSLTDLRRF GLKQEPTPQA MLADGVDLVS
FSGDKLLGGP QSGLIVGKQA LINKLQSHPL KRALRCDKLI LAALEATLIH YLNPETLDRE
LPIMAKFARS QAELRQIGER LQRALEPLFA PSYGIELVEC QTQVGSGSQP DTFLPSIALC
FNAQEGGSLT LLEQHFKQAQ RPVIGRMTQD QLRLDLRGID DEAELLAELS TLGVQL