Gene Shewana3_0101 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0101 
Symbol 
ID4478037 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp113437 
End bp114978 
Gene Length1542 bp 
Protein Length513 aa 
Translation table11 
GC content54% 
IMG OID639724621 
Producthistidine ammonia-lyase 
Protein accessionYP_867752 
Protein GI117918560 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2986] Histidine ammonia-lyase 
TIGRFAM ID[TIGR01225] histidine ammonia-lyase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCAG TCAATCATTT AGTATTAACG CCCGGCAGTT TAAGTCTGGC GCAACTGCGT 
GAAATCAGCC GCCATAAGCT GACACTCGAA CTGGCGCCTG AGGCGATAAA TGATATCAAC
ACCAGCGCGC AAATCGTGCA AAAGGTGTTG GATGAAGGTC GCACCGTTTA CGGCATCAAC
ACGGGTTTTG GTCTGCTGGC CAACACTAAG ATTGCCCCGG AAGATCTGCA ATTACTGCAA
CGCTCTATCG TGTTATCCCA CGCTGCGGGC ACGGGCCAAT ACATGCAGGA CGCGACCGTG
CGCCTGATGA TGGTGTTAAA GATCAACTCC TTAAGCCGTG GCTTCTCGGG TATCCGTTTA
GAAGTGATTA ATTTCCTTAT CAGCCTAGTG AATGCCGAGG TTTACCCCTG CGTGCCTGAA
AAAGGTTCTG TGGGTGCCTC TGGCGACTTA GCGCCGTTAG CCCATATGTG TTTGCCGCTG
TTGGGTGAAG GCGAGATGAG CTATCAAGGT CAGATTATTT CGGCCGCCGA AGGCTTAGAA
ATCGCTGGCC TAAAGCCAAT CGATTTAGCC GCGAAGGAAG GCTTAGCCCT GCTCAACGGT
ACTCAGGCTT CCACGGCACT GGCGTTGGAA GGCTTGTTCC ACGCTGAAGA CTTGTTTGCT
GCAAGCTCAG TGATTGGCGC CATGAGCGTC GAGGCAGCCA TGGGTAGCCG CAGTCCGTTT
GACCCACGCA TTCATGCGGC CCGTGGTCAG AAAGGACAAA TCGATGCGGC CATGGTGTTC
CGTCATCTGC TGGGCGAAGA GTCTGAAATC AGCTTGAGCC ACATCAACTG CGAGAAGGTG
CAAGATCCTT ACTCACTGCG CTGCCAACCA CAGGTATTAG GTGCGTGTTT AACCCAAATC
CGCCAAGCGG CCGAGGTGTT AGGCACTGAG GCCAATGGCG TGACCGATAA CCCGTTGGTA
TTCCAAGATA CTGGCGATAT TATCTCCGGC GGTAACTTCC ACGCCGAGCC CGTTGCTATG
GCAGCCGATA ACTTGGCGAT TGCGATTGCC GAATTAGGCG CGATTGCAGA GCGTCGTATC
GCGCTGCTCA TCGACTCTAG TCTGTCTAAA CTGCCACCTT TCCTGGTTAA AAACGGTGGA
GTGAACTCGG GCTTTATGAT CGCCCAAGTG ACGGCGGCGG CATTGGCCTC TGAAAACAAA
ACTTACGCCC ATCCAGCATC GGTCGACAGT TTACCGACCT CGGCCAACCA AGAAGACCAT
GTGTCTATGG CGACTTTTGC GGCGCGCCGT TTACGGGATA TGAGCGAAAA CACCCGTGGC
GTGTTAGCGG TTGAGTTATT GGCGGCCGCC CAAGGCTTGG ATTTCCGCGC GCCATTAATG
CCAAGCAAAG CAGTGGCGCA GGCGAAGGCC GAGCTACGCG AAGTGGTTGC CTACTATGAT
AAAGACAGAT ACTTTGCGCC GGATATCGAT GCGGCAACGG ATCTGCTTTA TACCGCCAGC
TTCAATGCTT ACTTGCCCCA AGGCGTATTG CCGAGTCTGT AA
 
Protein sequence
MKSVNHLVLT PGSLSLAQLR EISRHKLTLE LAPEAINDIN TSAQIVQKVL DEGRTVYGIN 
TGFGLLANTK IAPEDLQLLQ RSIVLSHAAG TGQYMQDATV RLMMVLKINS LSRGFSGIRL
EVINFLISLV NAEVYPCVPE KGSVGASGDL APLAHMCLPL LGEGEMSYQG QIISAAEGLE
IAGLKPIDLA AKEGLALLNG TQASTALALE GLFHAEDLFA ASSVIGAMSV EAAMGSRSPF
DPRIHAARGQ KGQIDAAMVF RHLLGEESEI SLSHINCEKV QDPYSLRCQP QVLGACLTQI
RQAAEVLGTE ANGVTDNPLV FQDTGDIISG GNFHAEPVAM AADNLAIAIA ELGAIAERRI
ALLIDSSLSK LPPFLVKNGG VNSGFMIAQV TAAALASENK TYAHPASVDS LPTSANQEDH
VSMATFAARR LRDMSENTRG VLAVELLAAA QGLDFRAPLM PSKAVAQAKA ELREVVAYYD
KDRYFAPDID AATDLLYTAS FNAYLPQGVL PSL