| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0100 |
|---|
| Symbol | |
|---|
| ID | 4478036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 111717 |
|---|
| End bp | 113387 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639724620 |
|---|
| Product | urocanate hydratase |
|---|
| Protein accession | YP_867751 |
|---|
| Protein GI | 117918559 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2987] Urocanate hydratase |
|---|
| TIGRFAM ID | [TIGR01228] urocanate hydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAGC GACACGACTC AAGCCGCCGC ATTATTGCGC CCCATGGTAG CCAATTAAGC
TGCAAAAGCT GGTTAACCGA AGCGCCAATG CGCATGTTAA TGAACAACTT ACATCCCGAT
GTGGCCGAGC GCCCAGAGGA TTTAGTGGTT TACGGTGGTA TCGGCCGCGC GGCCCGCGAC
TGGGACTGCT ACGACAAGAT TATCGAAGTG CTAAAACGCC TCGAAGACGA CGAAACCTTA
ATGGTGCAAT CGGGTAAACC TGTGGGCGTA TTCCGTACCC ACGCCGATGC TCCACGCGTG
CTGATTGCTA ACTCTAACCT AGTGCCACAT TGGGCAAACT GGGAACATTT TAACGAGTTA
GATAAGCAAG GTCTGGCCAT GTATGGCCAG ATGACCGCGG GTTCGTGGAT TTATATCGGG
ACTCAGGGCA TTGTCCAAGG TACCTACGAA ACCTTCGTTG CCGTGGCAAA ACAACACTTT
GGCGGCGTGG CTGCCGGTAA GTGGATCCTC ACCGGTGGTT TAGGGGGTAT GGGCGGCGCG
CAAACACTGG CTGGTACTAT GGCGGGCTTC TCTGTGCTTG CCTGTGAAGT GGATGAAACC
CGTATCGATT TTCGTCTGCG TACCCGTTAT GTGGATAAAA AGGCCACTTC ATTAGACGAA
GCCTTGGCGA TGATCAACGA CGCCAATGCC TCGGGCAAAC CCGTATCAGT GGGCCTGCTG
GCTAACGCCG CCGATGTCTT TGCCGAATTA GTGAAGCGTG GCATTACTCC TGATGTTGTC
ACCGACCAAA CCTCTGCCCA CGATCCGCTG AACGGCTATT TGCCACAGGG CTGGACTATG
GCGCAAGCGG CTGACATGCG TAAAACTGAT GAAGCCGCCG TCGTTAAAGC GGCTAAAGCC
TCGATGGCGG TACAGGTGCA AGCCATGCTG GAACTGCAAG CGGCAGGCGC GGCGACCTTA
GACTATGGTA ACAACATTCG CCAAATGGCC TTCGAAACTG GCGTTAAAAA CGCGTTCGAT
TTCCCAGGTT TTGTGCCTGC TTATATTCGC CCACTGTTCT GCGAAGGTAT TGGTCCGTTC
CGTTGGGTGG CCCTGTCTGG CGATCCTGAG GATATCTACA AGACCGACGC CAAAGTGAAG
GAACTGATCC CTGACAATCC TCATCTGCAC AACTGGTTAG ATATGGCCCG TGAACGTATC
GCCTTCCAAG GTCTACCAGC GCGTATCTGC TGGGTGGGCT TAAAGGACCG TGCACGTTTA
GCTCAAGCCT TTAACGAGAT GGTGAAAAAC GGCGAGCTGT CGGCGCCGAT CGTCATTGGT
CGTGACCACT TAGACTCAGG TTCAGTCGCC AGCCCTAACC GTGAAACCGA GTCTATGATG
GACGGTTCAG ACGCAGTATC TGATTGGCCA TTACTGAACG CTCTGCTAAA CACTGCCAGC
GGTGCGACTT GGGTGTCGCT GCACCACGGT GGTGGTGTGG GCATGGGCTT TAGTCAACAC
TCGGGTGTAG TGATCGTATG TGACGGCACT GAGGCCGCCG CTAAACGTGT TGGCCGCGTG
CTGTGGAACG ACCCTGCGAC AGGCGTGATG CGCCATGCGG ATGCGGGTTA CGAGATCGCG
AAAAACTGTG CAAAAGAGCA GGGCTTAGAT CTGCCCATGC TTAAAGACTA A
|
|---|
| Protein sequence | MDKRHDSSRR IIAPHGSQLS CKSWLTEAPM RMLMNNLHPD VAERPEDLVV YGGIGRAARD
WDCYDKIIEV LKRLEDDETL MVQSGKPVGV FRTHADAPRV LIANSNLVPH WANWEHFNEL
DKQGLAMYGQ MTAGSWIYIG TQGIVQGTYE TFVAVAKQHF GGVAAGKWIL TGGLGGMGGA
QTLAGTMAGF SVLACEVDET RIDFRLRTRY VDKKATSLDE ALAMINDANA SGKPVSVGLL
ANAADVFAEL VKRGITPDVV TDQTSAHDPL NGYLPQGWTM AQAADMRKTD EAAVVKAAKA
SMAVQVQAML ELQAAGAATL DYGNNIRQMA FETGVKNAFD FPGFVPAYIR PLFCEGIGPF
RWVALSGDPE DIYKTDAKVK ELIPDNPHLH NWLDMARERI AFQGLPARIC WVGLKDRARL
AQAFNEMVKN GELSAPIVIG RDHLDSGSVA SPNRETESMM DGSDAVSDWP LLNALLNTAS
GATWVSLHHG GGVGMGFSQH SGVVIVCDGT EAAAKRVGRV LWNDPATGVM RHADAGYEIA
KNCAKEQGLD LPMLKD
|
|---|
| |