Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0080 |
Symbol | |
ID | 4478016 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 92480 |
End bp | 94273 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639724600 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_867731 |
Protein GI | 117918539 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0335816 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTCTCG AACAATATCA CGTAATTCGA CTATTACAGC AGCAAAGCCA GTCATTAAAA GAGGCTATAG CGCTGGAAGG TTTTGAAATG GCTGCGCCTT GGCATCAAGT CAGTTGGCAG GCATTCGATC AAATCAGCCA TAAAATTGCA CAGGTGTTGA TTGAACTTGG CGTACAAGTG CAAGACCGTT GCGTGATCCT GTCGCAAAAC TGCCCTCAAT GGACCTGTGC CGACATAGGT ACCCTGAAAA GCCGTGCCGT TGTGGTCCCC ATTTACCCGA CCAGTACCTT AGAGCAAGCC AGCTTTATCA TTAACGATGC GGCGGCCAAG GTGATTTTTG TTGACGACGC TAAGCAATAT GCGCTGGCCT GTGAGCTGCA AAAACAGTGT CCGACCCTAG AGCATGTGAT TGTGTTCGAT GCGAGTGTTG AGCTGGCGCA GGACAAGGCT CAACATCAGC ATTTAGACAG CTTGTTAGCC AAAGAATATG GCCAGAGTGC TGAGCTTGAG CAGCGCTTAA AGGATGCCAA TCTCGACGAC CTGTTAACCT TGATTTATAC CTCTGGTACC ACGGGCGACC CTAAGGGCGT GATGCTGGAT TACCGCAATA TGGCTTCGAC TGTGCGTCAG CACGATCAGA TCCTGCCGTT TACTACTGGC GATGTGTCGT TAGCTTTCCT ACCGCTAAGC CATGTGTTTG AGCGTGGTTG GAGCTTCTAC GTGCTGTGCC GTGGCGGCCA CAACGTGTAT CTGCAAAACA CCCAAAGAGT GAAAGAGGCC ATCAGCGCAG TGCGTCCGCA TACCCTGTGC GTGGTACCGC GTTTCCTCGA GAAGGTTTAC AGCGCAGTGC AGGATAAGGT CGCTAAATCC GCCGAAGGCC GTAAAAAACT GTTTGCTTGG GCCATGGGCG TCGGCGAACG CCAGTTTGAG GTGAGCCAAG GCCGCGCTAA GGGCGGTTTA TGGTTATCCT TGCAATGGCG TTTAGCGCAC AAGCTGGTTT ACAGCAAGTT GCAAGCCGTG CTCGGTGGGC GCTTAAAGTT TATGCCCTGC GGTGGCGCCG CTCTCGATTT AAACGTAGCG TCTTTCTTCC ATGCCATTGG TATTCCGGTA CTTTGTGGTT ACGGCATGAC GGAAACGAAC GCCACTGTGA CCTGTAATAC CCTAGATAAC CGAGTTGCGG GTTCGAACGG TAAAGTCTTA CCCGAAATCG AAGTGAAGCT AGGTAAGGAC GATGAGATTT TAGTCCGTGG CGACACTGTG ATGCGCGGTT ATTACAATCG CCCCGAAGAT ACCGCAGCTG CCTTCGAAGA TGGCTGGTTA AAGACCGGCG ATGCGGGACG ACTCGATGCC AATGGCAATT TATTTATTAC CGACCGCATC AAAGAGTTAA TGAAAACCTC CAACGGTAAA TACATTGCTC CGCAACGGGT TGAAGGCACA GTGGGCCGTT GCCCCTTTAT CGAACAAGTG GCTGTGATTG CCGATGCCCG TAACTATGTG ACGGCGCTGA TTGTGCCAGC CTTTGAATCC CTCGAAGCCT GGGCCAAGGA TAAGGGCTTG AAATACGAGT CGCCTATCGA GCTGCTGCGT CACAGCCATG TGGTTGAACA TTTCGAGCAG CGCTTAAAGC ATTTACAGCA AGAGTTGGCG GGTTTTGAGC AAATCAAAAA GTTTACCCTG CTGCCTGAAG CCTTTTCGAT GGAGGCGGGA TTAATCACCC CGACGCTGAA ATTGCGCCGC AAAATGATTT ACCACAAGTA CGCCCATGAA ATTAATGCTA TGTACAATAA TTGA
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Protein sequence | MSLEQYHVIR LLQQQSQSLK EAIALEGFEM AAPWHQVSWQ AFDQISHKIA QVLIELGVQV QDRCVILSQN CPQWTCADIG TLKSRAVVVP IYPTSTLEQA SFIINDAAAK VIFVDDAKQY ALACELQKQC PTLEHVIVFD ASVELAQDKA QHQHLDSLLA KEYGQSAELE QRLKDANLDD LLTLIYTSGT TGDPKGVMLD YRNMASTVRQ HDQILPFTTG DVSLAFLPLS HVFERGWSFY VLCRGGHNVY LQNTQRVKEA ISAVRPHTLC VVPRFLEKVY SAVQDKVAKS AEGRKKLFAW AMGVGERQFE VSQGRAKGGL WLSLQWRLAH KLVYSKLQAV LGGRLKFMPC GGAALDLNVA SFFHAIGIPV LCGYGMTETN ATVTCNTLDN RVAGSNGKVL PEIEVKLGKD DEILVRGDTV MRGYYNRPED TAAAFEDGWL KTGDAGRLDA NGNLFITDRI KELMKTSNGK YIAPQRVEGT VGRCPFIEQV AVIADARNYV TALIVPAFES LEAWAKDKGL KYESPIELLR HSHVVEHFEQ RLKHLQQELA GFEQIKKFTL LPEAFSMEAG LITPTLKLRR KMIYHKYAHE INAMYNN
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