| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0035 |
|---|
| Symbol | def |
|---|
| ID | 4479453 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 42344 |
|---|
| End bp | 42850 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639724551 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_867686 |
|---|
| Protein GI | 117918494 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000196537 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTAT TAAAAGTTTT ACGCTTTCCC GATGAAAGAT TGCGAACTCA AGCGACGCCG
GTCACAGAGT TTACTGCTGA GTTGCAAACA CAAATCGATG ATATGTTCGA GACCATGTAC
CAAGAAAAAG GGATTGGTCT GGCAGCAACC CAAGTCGACT ACCATAAACA ACTGATCGTG
ATGGATTTAC AAGACGAGGT CGATCGTCCT AAAGTCTTTA TCAATCCCGA AATTATTGCC
AGTAGCGGTG ATTTCTGTAA CGAGGAAGGT TGTCTGTCAG TCCCAGGTAT CTATGCCAAG
GTCGACCGCG CCGAGTTTGT TACCGTTAAG GCACTGGATA GACACGGTAA TGAATTCACC
GTTGAAGCCG ATGAGCTTTT TGCTATTTGT ATTCAGCATG AAATGGATCA TCTGAAAGGT
AAATTATTTG TCGATTATCT GTCGCCATTG AAACGCCAAC GGATCAAACA GAAACTTGAA
AAAGCGGCCA GACAGGACGC CAAATAA
|
|---|
| Protein sequence | MALLKVLRFP DERLRTQATP VTEFTAELQT QIDDMFETMY QEKGIGLAAT QVDYHKQLIV
MDLQDEVDRP KVFINPEIIA SSGDFCNEEG CLSVPGIYAK VDRAEFVTVK ALDRHGNEFT
VEADELFAIC IQHEMDHLKG KLFVDYLSPL KRQRIKQKLE KAARQDAK
|
|---|
| |