Gene Shewana3_0027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0027 
Symbol 
ID4479445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp34058 
End bp35515 
Gene Length1458 bp 
Protein Length485 aa 
Translation table11 
GC content50% 
IMG OID639724543 
ProductTrkH family potassium uptake protein 
Protein accessionYP_867678 
Protein GI117918486 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0168] Trk-type K+ transport systems, membrane components 
TIGRFAM ID[TIGR00933] potassium uptake protein, TrkH family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0260602 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000366479 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAATACA AAACCATAAT AAGAATCATA GGTCTACTTA TCGGCCTGTT CTCCATCACT 
ATGCTGCCGC CAGCCTTAAT CGCCATTTGG TATAACGATG GCGGTGGTAC TGCGTTTATT
CAGGCATTTT TTGTCAGCTT ATTTATCGGT TTTTGGCTCT GGTATCCTAA TCGTCGCTGC
AAAGAGGAAT TGCGAACCCG TGAGGGGTTT CTGATTGTGG TCCTGTTCTG GACCGTTCTT
GGCTCCATCG GTGCTTTACC TTTTATCTTC TCAAGCCAGC CCGATCTCAG CTGGACCGAC
AGTTTTTTCG AATCATTTTC CGCACTGACC ACCACGGGAG CCACAGTTAT TGTCGGACTG
GACTCCTTGC CTAAGGCCAT TCTGTTTTAT CGACATATGC TGCAATGGCT CGGCGGTATG
GGGATCATCG TTTTAGCCGT GGCGATTCTG CCTGTGCTGG GCGTTGGGGG CATGCAGCTG
TATCGCGCCG AGATTCCTGG CCCTGTGAAG GACAGTAAGA TGACGCCGAG GATTGCCGAA
ACGGCCAAGG CGTTATGGTA CATCTATCTA TTGCTAACCA TTGCCTGTGC TGGCGCTTAT
TGGCTGGCGG GAATGAGCGT TTTCGATGCC GTGTGTCACT CGTTTTCGAC CATCGCTATC
GGGGGCTTTT CGACCCACGA TGCCAGTATG GGATACTTCG ACAGCTCAGT GATCAACCTG
ATTTGCGTGT TCTTTTTGAT TGTCTCTGCG GTGAACTTTA GCGTGCACTT TGCGGCATTT
TCGCGTCGCG GGATCAATTT TAGAGTCTAT TTTCGAGATA CCGAGTTCAA AATGCTGGTG
GCGATTCAGT TGGTGCTGAC GGCGATTTGC TTCTTAACCC TTTATCACTC AGGGATTTAT
GACTCGCCAG AAGAAACCTT AGATCACGCC TTATTCCAAG CGGTTTCGGT GGCGACAACC
GCCGGCTTTG GTACCGAAAG CTTCCATATG TGGCCGCTGT TCCTGCCGAT TCTGTTGATC
TTCTCAAGCT TTATCGGTGG TTGTGGTGGT TCAACTGCGG GCGGGATTAA GGTGATCCGG
GTTATCCTGC TGCTGTTACA AGGTTCACGC GAACTTAAAC GCCTTGTTCA CCCTAAGGCG
ATGTTCTCGA TTCGTATCGG CTCCAAGGCA TTACCTGACC GGGTTGTCGA TGCCGTGTGG
GGATTTTTCT CCGCCTATGC CTTAGTCTTC GTGCTGTGTA TGTTAGCGCT GATGGCTATG
GGGCTAGATG ATATTACCGC CTTTAGTGCC ACGGCGGCCT GCTTAAATAA CCTCGGTCCG
GGTCTTGGGG AAGTAGCAAG TAACTACGCC AGTATTGGTG ATGGTGCTAA ATGGGTGCTG
GTGGTAGCCA TGTTATTTGG CCGCCTCGAA GTCTTTACCT TGCTGATTTT GTTCACGCCA
ACTTTCTGGA GGGATTAA
 
Protein sequence
MQYKTIIRII GLLIGLFSIT MLPPALIAIW YNDGGGTAFI QAFFVSLFIG FWLWYPNRRC 
KEELRTREGF LIVVLFWTVL GSIGALPFIF SSQPDLSWTD SFFESFSALT TTGATVIVGL
DSLPKAILFY RHMLQWLGGM GIIVLAVAIL PVLGVGGMQL YRAEIPGPVK DSKMTPRIAE
TAKALWYIYL LLTIACAGAY WLAGMSVFDA VCHSFSTIAI GGFSTHDASM GYFDSSVINL
ICVFFLIVSA VNFSVHFAAF SRRGINFRVY FRDTEFKMLV AIQLVLTAIC FLTLYHSGIY
DSPEETLDHA LFQAVSVATT AGFGTESFHM WPLFLPILLI FSSFIGGCGG STAGGIKVIR
VILLLLQGSR ELKRLVHPKA MFSIRIGSKA LPDRVVDAVW GFFSAYALVF VLCMLALMAM
GLDDITAFSA TAACLNNLGP GLGEVASNYA SIGDGAKWVL VVAMLFGRLE VFTLLILFTP
TFWRD