Gene Shewana3_0023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0023 
SymbolfadA 
ID4479441 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp28251 
End bp29414 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content51% 
IMG OID639724539 
Product3-ketoacyl-CoA thiolase 
Protein accessionYP_867674 
Protein GI117918482 
COG category[I] Lipid transport and metabolism 
COG ID[COG0183] Acetyl-CoA acetyltransferase 
TIGRFAM ID[TIGR01930] acetyl-CoA acetyltransferases
[TIGR02445] fatty oxidation complex, beta subunit FadA 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.188213 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000293236 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACAAG CTGTTATCGT AGATTGCATT CGTACTCCTA TGGGCCGTTC TAAGGCTGGG 
GTGTTTCGTA ATGTACGTGC AGAAACACTC TCTGCCGAAT TAATGAAAGG TCTATTACTG
CGTAACCCGC AATTAGATCC CAATACTATT GAAGATGTGA TTTGGGGCTG CGTGCAGCAA
ACCCTAGAGC AAGGCTTCAA CATTGCCCGT AACGCATCAT TGCTGGCAGG TATCCCGAAG
ACGGCTGGCG CTGTGACAGT CAACCGCTTA TGTGGTTCTT CGATGGAAGC CATTCATCAA
GCCGCTCGTG CAATCATGAC TGGCATGGGC GACACCTTTA TCATCGGTGG TGTTGAACAC
ATGGGCCACG TGCCAATGAA CCACGGTGTG GACTTCCACC CAGGTTTAGC CAATAACGTC
GCTAAAGCGT CTGGCATGAT GGGTTTAACC GCTGAGATGT TGGGTAAGCT TCACGGTATT
ACCCGTGAGC AGCAAGATGC CTTTGCAGTG CGTTCACACC AACGCGCTCA CGCAGCGACA
GTTGAAGGCC GCTTTGCCAA GGAAATCTAT GGCATCGAAG GCCATGATGC TAACGGCGCG
CTAATTAAAG TGCTGCACGA CGAAGTGATT CGTCCAGAAA CCTCAATGGA GTCATTGGCG
GCGCTGCGCC CAGTATTCGA CCCAGCAAAC GGTACTGTTA CTGCCGGTAC CTCTTCAGCA
TTATCTGACG GTGCTTCGGC AATGTTAGTG ATGGAAGAAT CTAAAGCGCG CGCTTTGGGT
CTACCAATCC GTGCCCGTAT CCGCTCAATG GCAGTTGCAG GTTGTGACGC GGCAATCATG
GGTTACGGTC CAGTACCTGC TACTCAAAAA GCACTGGCTC GCGCAGGCAT CACAGTTAAT
GATTTGGATG TTATCGAGCT AAACGAAGCG TTCGCTGCTC AGTCTCTACC CTGCGTTAAA
GACCTAGGTC TGCTCGATGT GGTAGAAGAC AAGATCAACC TAAATGGTGG CGCGATTGCG
CTTGGCCATC CACTGGGCTG TTCTGGTGCA CGTATTTCGA CAACGCTTAT CAACCTGATG
GAACACAAAG ATGCGACCTT AGGTTTAGCC ACTATGTGTA TCGGTTTAGG CCAAGGTATT
GCGACCGTTT TCGAACGCGT TTAA
 
Protein sequence
MKQAVIVDCI RTPMGRSKAG VFRNVRAETL SAELMKGLLL RNPQLDPNTI EDVIWGCVQQ 
TLEQGFNIAR NASLLAGIPK TAGAVTVNRL CGSSMEAIHQ AARAIMTGMG DTFIIGGVEH
MGHVPMNHGV DFHPGLANNV AKASGMMGLT AEMLGKLHGI TREQQDAFAV RSHQRAHAAT
VEGRFAKEIY GIEGHDANGA LIKVLHDEVI RPETSMESLA ALRPVFDPAN GTVTAGTSSA
LSDGASAMLV MEESKARALG LPIRARIRSM AVAGCDAAIM GYGPVPATQK ALARAGITVN
DLDVIELNEA FAAQSLPCVK DLGLLDVVED KINLNGGAIA LGHPLGCSGA RISTTLINLM
EHKDATLGLA TMCIGLGQGI ATVFERV