| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3641 |
|---|
| Symbol | clpX |
|---|
| ID | 4483828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 4576676 |
|---|
| End bp | 4577938 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639724392 |
|---|
| Product | ATP-dependent protease ATP-binding subunit ClpX |
|---|
| Protein accession | YP_867532 |
|---|
| Protein GI | 117926915 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.606159 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAATA ACTCTTCCGA TTCCAGCAGC ATCCTGCACT GCTCGTTCTG CGGTAAGAGC
CAGAACGAGG CGCGCAAGCT GATTGCCGGC CCTTCCGTGT TTATCTGTGA TGAGTGTGTT
GATCTCTGTA TGGAGATCAT TCGTGAAGAT AAGAGCGATC AGCTTGAGAA AAAGCGGGGC
GGTGTACCCA CCCCGATGGA GATTAAAAGC ACCCTGGACG ATTATGTTAT CGGCCAGGAT
AACGCCAAGC GTACCTTGGC GGTGGCGGTC TATAACCACT ACAAGCGGCT GGAGAGTAAC
GATACTTCAG CAGATGTGGA GATCTCCAAA AGCAACGTGT TGATGATCGG TCCCACGGGT
TCGGGTAAAA CGCTGTTGGC GCAAACCCTG GCGCGCCTAC TGGATGTCCC CTTTACCATC
ACCGATGCCA CCACCCTGAC CGAGGCCGGT TATGTGGGGG AGGATGTGGA GAACATTATC
CTGCGCCTGT TACAGGCGGC CGATAATGAT GTGGAAAAGG CCCAGCGGGG TATTGTTTTT
ATTGATGAGA TTGACAAAAT CTCGCGTAAA TCCGACAACC CATCCATCAC CCGTGATGTC
TCTGGTGAAG GGGTGCAGCA AGCGTTGTTG AAAATTATTG AAGGTACCGT GGCCAGCGTA
CCGCCCCAGG GTGGTCGCAA GCATCCCCAG CAGGAGTATC TACAGGTCGA TACCACCAAT
ATCTTGGTGA TCTGTGGGGG GGCTTTCAAT GGTTTAGAGA AGGTGATCGA GAAGCGTTCG
AGCAAACATC ATGGTATTGG TTTTGGGGCC ACGGTACGCA AGAACAGCAA AGAGGAGAGT
GTCAACGTCC TGCTTAAAGA GCTGGAGCCT GAGGATCTGC TGGCCTTTGG TTTGATTCCC
GAGTTTGTGG GGCGTCTGCC GGTGGTGGCC ACCCTGGAAG AGCTGAGCAA AGAGGCGTTG
GTGCGTATTC TTACAGAGCC GAAAAATGCC TTAGTAAAAC AGTACCAAAA ACTGTTGGAG
ATGGAGAACG TCAAGCTCAC CTTTACCGAT GGTGCTTTAG AAGCGCTGGC GCAAAGGGCC
ATTGAGCGTA AAACCGGTGC CCGTGGTCTG CGTGCACTGC TGGAGTCGAC GTTACTTGAC
ATCATGTTTG AGATTCCTTC CAAGCAAGGG GTGCGCGAAG TGGTGATCAA CCGCGAAGTG
GTTGAGAAGC AGATCGAGCC CCTGCTGATC TATGCTGAAG AAGCCTTGGA AGCCAATGCC
TGA
|
|---|
| Protein sequence | MPNNSSDSSS ILHCSFCGKS QNEARKLIAG PSVFICDECV DLCMEIIRED KSDQLEKKRG
GVPTPMEIKS TLDDYVIGQD NAKRTLAVAV YNHYKRLESN DTSADVEISK SNVLMIGPTG
SGKTLLAQTL ARLLDVPFTI TDATTLTEAG YVGEDVENII LRLLQAADND VEKAQRGIVF
IDEIDKISRK SDNPSITRDV SGEGVQQALL KIIEGTVASV PPQGGRKHPQ QEYLQVDTTN
ILVICGGAFN GLEKVIEKRS SKHHGIGFGA TVRKNSKEES VNVLLKELEP EDLLAFGLIP
EFVGRLPVVA TLEELSKEAL VRILTEPKNA LVKQYQKLLE MENVKLTFTD GALEALAQRA
IERKTGARGL RALLESTLLD IMFEIPSKQG VREVVINREV VEKQIEPLLI YAEEALEANA
|
|---|
| |