| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3460 |
|---|
| Symbol | |
|---|
| ID | 4482816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 4321266 |
|---|
| End bp | 4322789 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639724208 |
|---|
| Product | ATP synthase F1, alpha subunit |
|---|
| Protein accession | YP_867351 |
|---|
| Protein GI | 117926734 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0056] F0F1-type ATP synthase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00962] proton translocating ATP synthase, F1 alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.823714 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTCA GCGTCGCGGA AATCAGCGGT ATCCTGAAGA AACAGATCGC CGAGTACGGT
AAAGAGGCGG AAGTCTCTGA AGTCGGCGAA GTTATCGCGG TGGGTGATGG TATCGCCCGT
GCCTACGGTC TTGACAATGT CATGGCCGGT GAAATGGTGG AGTTCGAAGA TGGTACCCAG
GGCATGGCCC TGAACCTTGA AGAAGATAAC GTGGGTATCG TTATCTTTGG TGAAGGTCTT
GCCATCAAAG AAGGTACCAC CGTTAAGCGT ACTGGCCGCA TTGTGGATGT ACCTGTGGGT
AAAGGGCTGC TCGGTCGTGT AACCGACGGT CTAGGCAACC CCATCGACGA CAAAGGTCCC
CTTGAGACCA CCGAGCGTCG TTTGGCGGAG GTCAAAGCCC CAGGCATTAT CCCCCGTAAA
TCGGTGCATG AGCCTCTGCA CACCGGTATT AAAGCACTGG ACGGTTTGGT GCCCATCGGT
CGTGGTCAGC GTGAATTGAT CATTGGTGAC CGCCAAACCG GTAAAACAGC GGTGGCCATC
GACACCATTA TCAACCAAAA GCGTACCCAT GAGACCGACT CTCCGGTTTA CTGCATCTAC
GTGGCCATCG GTCAAAAGCG TTCGACCGTC GCCCAGGTTG TGCAGACCCT GGAAGAGAAT
GGTGCCATGG CTTACACCAC GGTGGTAGCC GCTACCGCAT CCGATCCGGC CCCCATGCAG
TTCTTGTCGG CCTACACCGG TTGCGCCATG GGTGAGTACT ATCGTGATAA TGGCATGCAC
GCCCTGATCG TCTATGATGA TCTCTCCAAG CAGGCCACCG CATACCGTCA GATGTCTCTG
ATTCTGCGCC GTCCGCCTGG TCGTGAAGCC TATCCTGGTG ACGTGTTCTA CATTCACTCC
CGCTTGCTTG AGCGTGCGGC TAAGATGAAT GATGAACATG GTGGTGGTTC TTTGACCGCA
CTGCCCATCA TTGAAACCCA AGATGGTGAC GTGTCGGCCT ACATCCCCAC CAACGTGATC
TCCATCACCG ATGGTCAGAT CTTCTTGGAA ACCGACCTCT TCTACTCCGG TATTCGCCCT
GCGATCTCCG TGGGTCTGTC GGTCTCTCGG GTGGGTGGTT CGGCTCAGGT TAAAGCGACC
AAACAGGTTG CCGGTACCCT GCGTCTGGAC TTGGCGCAGT ACCGTGAAAT GGCGGCCTTT
GCCCAGTTTG GTTCTGACCT AGATGCCACC ACCCAGAAAT TGCTACACCG TGGTAAGCGC
CTTATGGAAC TGCTGAAGCA GGCCCAGTAT GCGCCCCTCT CCATGGAAGA GCAGGTGGTT
TCTATCTTTG CTGGTACCCG TGGTTTTCTG GACGTGGTGG ATGCCGATGC CGTGGTGAAA
GCTGAGTTAG AGTTGCTCAA GCAGATGCAT GCAAAGCATA GCGATCTTCT GGACACCATT
CGTACCAGTG GTAAGCTGGA TGCGGACACA GAAACCAAAC TTGGTGTGGC GATTACCGCC
ATCATCAAAG AGTTTTTGGC CTAA
|
|---|
| Protein sequence | MQVSVAEISG ILKKQIAEYG KEAEVSEVGE VIAVGDGIAR AYGLDNVMAG EMVEFEDGTQ
GMALNLEEDN VGIVIFGEGL AIKEGTTVKR TGRIVDVPVG KGLLGRVTDG LGNPIDDKGP
LETTERRLAE VKAPGIIPRK SVHEPLHTGI KALDGLVPIG RGQRELIIGD RQTGKTAVAI
DTIINQKRTH ETDSPVYCIY VAIGQKRSTV AQVVQTLEEN GAMAYTTVVA ATASDPAPMQ
FLSAYTGCAM GEYYRDNGMH ALIVYDDLSK QATAYRQMSL ILRRPPGREA YPGDVFYIHS
RLLERAAKMN DEHGGGSLTA LPIIETQDGD VSAYIPTNVI SITDGQIFLE TDLFYSGIRP
AISVGLSVSR VGGSAQVKAT KQVAGTLRLD LAQYREMAAF AQFGSDLDAT TQKLLHRGKR
LMELLKQAQY APLSMEEQVV SIFAGTRGFL DVVDADAVVK AELELLKQMH AKHSDLLDTI
RTSGKLDADT ETKLGVAITA IIKEFLA
|
|---|
| |