Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_3395 |
Symbol | |
ID | 4484081 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 4232385 |
End bp | 4234889 |
Gene Length | 2505 bp |
Protein Length | 834 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639724143 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_867287 |
Protein GI | 117926670 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGATC ATAATAAATC AGAGCTGCGC AAACGTGCTG AAGAGTTGAT GCTGCGTCAG GAGCAGATTC ACACCAAATG GGATAGGGAT AATGTGAATG CCCTTATCCA TGACCTAAAC GTACACCAAA TTGAGTTGGA GATTCAAAAT CAGGAGCTGC GGGAATCTCA ATTGCGCTTG GAAAAGGCCA AACAGGTGCA GGAGAGTGCC CTAGCCCGCT TTGAGGCACT TTTTAACAGT GCGCCTGAAG GGTTTATTTT GATTGATGTC TCGGGCATGG TCCTAGAGTG CAACCATACC ACCCTGGAGA TGTTGGGCTG CAAGCGGGAA GATCTGATCC GCAAGCCCTT TTCTGCCTTT GTGCATATTG AAGACCAGCC TAAATTTTAT GCTTCTTACC CCTCGTTTTT TAAAAGTACC TATCCAAAGC CCATTGAGAT ACGGCTCATC CATAAGGGGA GCGCATTTAA ACATAAAGAT CACTCTTTTA TTGCGGAGTT GACCGGGTGC AGCACCCTGA AACAGGATCT ATTCAAAGAT CTTTATCATG ATAATCCATT TATCTTAGTC TCCATCTACA ACATTAACGC CCACAAACTG CTTGAAAGAG AGCTGGCGGA TGCCAAACAA GCGGCTGAAT TGGCGAACCA TGCGCTTTTA GAGAGTCATG ACAAACTCGA AGCCACGGTT GCCCAACGTA CCGCCGCCCT CAAAACCAGC AATGAGCAGT TGAAGCAGCA AATGATTGAA CGGGAACAGG CCCAGCACCG CCTACGCTTG ACCGCCGGGG TATTTGAAAA CACCAGCGAA GCGATCATTA TTACCGATGC CGCTAACCGG GTTATGGAGG TCAACCCCGC TTTTGTGCGT ATTACAGGCT ACCCAGCCGA TGAGGTGATT GGCCGAGATC CTGGTTTCAT GAAATCGCAC CGCCATACTC ACGAATTTTA TGCTGAAATG TGGAAGAAGA TCTGGCAAAC GGGTCAGTGG CAAGGGGAGA TATGGGACCG TCGCCACAAT GGCGAGATCT ACCCAAAATG GTTAACCATC AACGCCGTGT ATGATGAACG TGGCCATTTG GTCAACTGTA TTGGCATTTT TTCGGATATT TCACGGTTAA AAGCAACCGA GGAGCGGTTG GAACAGTTGG CCTTTTTTGA CTGTTTGACC AAACTGCCCA ACCGTGCGCA CTTTCAATCG CGCCTGGACC ACGCTTTAAC CGCCGCCAAC CGTCGCCAAA ATAAAGTTGG ATTGATTTTT ATTGATTTGG ACCATTTTAA ACACATCAAT GACTCCATGG GCCACAATGC CGGGGACCAA CTGTTGATCG AAGCGGCCAA GCGTATACAA AGTTGTGTGC GTGAAGAGGA TACGGTGGCC CGCATGGGGG GGGATGAGTT CACCATTATT CTGGCCGACC TGACAGATAC CGCTAAAGTG ATGACCAATG TGGCTTTGAC TATTCTGGAA TCCTTCACAC ACCCCATTGT GCTAGAAGAT AAAAAGCTTT TTATAGGGTG CAGTTTGGGT ATGGCCATCT ACCCTGACGA TAGCGGCAAC GCTGCTCTGC TGATTAAACA TGCCGACACG GCCATGTACC GCGCGAAGGA GTCTGGCCGC AACCGCTACT CCTTTTACAC AGCCGAGATG AATGCCCAAG CGCAAAGCCG TATCTCCCTA GAGTCCGAAC TACGCTATGC CATTGACCAT AAAGCGTTTG AACTTTACTA TCAACCCAAG GTGGATGCCC ATAGCTCTGA GATTGTCGGG TTTGAAGCCC TTTTGCGCTG GATACACCCA ACCGAGGGTG TGATTTCACC CAACCAATTT ATTCCCATTG CCGAAGAGTC TGGATTGATT GCCGCCATTG GCAATCAGGT CGTGGAGATG GCCTGCCAAG GCTTGCAGCG GATCAACCGC TGCACCCCTA AACCCTTACC GGTAGCCATT AACCTTTCGG TTCGGCAACT GCGGCAAGAT AATCTGGTTA ACTATTTTTC TCAGACTTTG GCAAACTATG GTATCGAGGC CGAACAGCTT GAGTTAGAGG TTACCGAGAG TTTTTTAGCC AAACCCATTG AAAAGAGCGC GGCGTTGTTG CAAGCCCTTC ACCAACTTGG CTACAAAATC GCCATTGATG ACTTTGGCAC TGGTTACTCT TCCTTGAGCT ACCTGAAAAA TTTTCCGATC CACACCCTGA AAATTGATCG CTCCTTTGTC ATGGAAGTTG CGCACAATCA GGAGAGCCGC ACCATCGTGC AAGCCATTAT CTCAATGGCC CATGCGCTGG GTTACGACCT GGTGGCCGAG GGGGTGGAGA CAGCCGCACA AGTTAATGTT CTGCAAGGGC TGGGATGTGG GATTATGCAG GGCTTTCACT ATGCGCGCCC CGCACCATTA CATGAAATAT TAGAGATTCT TAGCCTAGGG AGCACGCTGG CAATCCAAGC AGCGTCATCC CTGAAAAACC CAAAAAACAC CCCCAACGAG TTTGTATCAG AATGA
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Protein sequence | MDDHNKSELR KRAEELMLRQ EQIHTKWDRD NVNALIHDLN VHQIELEIQN QELRESQLRL EKAKQVQESA LARFEALFNS APEGFILIDV SGMVLECNHT TLEMLGCKRE DLIRKPFSAF VHIEDQPKFY ASYPSFFKST YPKPIEIRLI HKGSAFKHKD HSFIAELTGC STLKQDLFKD LYHDNPFILV SIYNINAHKL LERELADAKQ AAELANHALL ESHDKLEATV AQRTAALKTS NEQLKQQMIE REQAQHRLRL TAGVFENTSE AIIITDAANR VMEVNPAFVR ITGYPADEVI GRDPGFMKSH RHTHEFYAEM WKKIWQTGQW QGEIWDRRHN GEIYPKWLTI NAVYDERGHL VNCIGIFSDI SRLKATEERL EQLAFFDCLT KLPNRAHFQS RLDHALTAAN RRQNKVGLIF IDLDHFKHIN DSMGHNAGDQ LLIEAAKRIQ SCVREEDTVA RMGGDEFTII LADLTDTAKV MTNVALTILE SFTHPIVLED KKLFIGCSLG MAIYPDDSGN AALLIKHADT AMYRAKESGR NRYSFYTAEM NAQAQSRISL ESELRYAIDH KAFELYYQPK VDAHSSEIVG FEALLRWIHP TEGVISPNQF IPIAEESGLI AAIGNQVVEM ACQGLQRINR CTPKPLPVAI NLSVRQLRQD NLVNYFSQTL ANYGIEAEQL ELEVTESFLA KPIEKSAALL QALHQLGYKI AIDDFGTGYS SLSYLKNFPI HTLKIDRSFV MEVAHNQESR TIVQAIISMA HALGYDLVAE GVETAAQVNV LQGLGCGIMQ GFHYARPAPL HEILEILSLG STLAIQAASS LKNPKNTPNE FVSE
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