| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3384 |
|---|
| Symbol | |
|---|
| ID | 4483320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 4216441 |
|---|
| End bp | 4218084 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639724132 |
|---|
| Product | Fis family transcriptional regulator |
|---|
| Protein accession | YP_867276 |
|---|
| Protein GI | 117926659 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGGC GCTATCTTGC AACCCCCCTG CTCTGTTTGC TGTTGATTTT GCCTCAGTTG
GGTTGGGGCG AGCCAGCGGT GCAACGCTAC ACTTGCCCCA TGCACCCCCA CTATATTGCC
GATCAGATGG GCAGCTGCCC CTTGTGCGGC ATGGATCTGG TACCCTTGGC GGCGGGCGAG
CGCCCCACCA GCAGCAGCCC GGATAATCCA CGCAACGCTG TCACCATTGC CCCGGAGACC
ATTCAAAATA TGGGGGTACG CTACGGCATC CCCCAATGGA CCGAGTTTGG TCGCCGTATC
CGTGCTTTTG GCATGGTGAT GGAAAATGAA CGCGCCCAAA GTGTGGTGGC CAGCCGTGTC
GCTGGCTGGA TTGAAAAATT GCAGGTTACT GCGGTAGGCG ACACCATTCA GCAGGGCATG
GAACTCTACC GACTGTTTAG TCCCGATCTG GTGGCCGCGC AGCGGGATCT GCTCAGCGCC
GCTCAACAGC AGGGGGGTGG GCGTCTGCAC GCGGCCACCC AACGCTTGCT GGCACTGGGG
GTGGAACGCC GCTTGATTAA CCGTTGGATC GCGGAAAAAA GCCTCTCCGA GCGGGTACCC
TTTTACGCCG AAGGCAGCGG CACCCTCAGC CGCTTGGAGG TCCGCCAAGG CAGTTATGTC
AAACCGGGGA TGACCCTAGC GGTGATCCAG GACTACAGCC GGGTGTGGCT TAACGCCAGC
GTGGCGGAGA AAGATCTCTC CCGCATCACC AAACAGACCC CCGTACGTGT GCTGCTACCC
CACCTGCCTG GGCGTAAGGT GGCGACAAAA ATTGATTATA TTCACCCCAT CATTGATGCT
GCCAGCCGCA CCGGCACGGT CCGCTTGCTG CTGGATAATC AGGATGGCGC CCTGCGCCCC
GGGGCCTATG CGGATGTGCT GTTCGAGGTC GGTGTGGATC GTCGTCTGGC CCTGCCGGAC
GGGGCATTGC TCAACGATGC CCAAGGCTAC CACGTGGTGC TGGCCCTAGG AGAGGGACGC
TTTCAGCCCA AAGCGGTCAA GGTGGGGCTC TCCAGCGGTG GCTTTACCGA AATCCTGGAA
GGTCTGGACG AACAGCAGCA GGTGGTGATC TCCGGGCAAT TTCTCATCGA CTCTGAGAGT
GCTTTAGGGG AATCCTTTAC CAAGCTTGAG CGGCTCAAAC CCCCCCTTAA CCAGCTTGCG
CCAACCCCCG CCCAACTTGC CATGCTCGAT CATTTGGTGG ATGCCGCCCT CTATATCCAT
GAGGCCCACA TAGATGGCTA CGCCGTAGAA CCGACGCAGT TGCAACCTGC TCGGGATATT
AAAAGCCTGC TCTGGCCACA CTTTGGCCAG ACCCGTTTGG GGGCGATTCT CACCCAGGCT
GAAGATGCCC TAAGTAGGGC CCAACAGGCA CGCACCCAAG CCGAGCTGCT CACTGCGCTG
GATCAGCTGG TGCAAGCCCT GCAACCCTGG ATACAACAGG GTGCCGCCCA ACACTATCAA
GCCAAGGGGC TGCATCTTTT CCAACATCAG GGAAGCCCCG CGCGTTATTG GCTGCAACTT
GGCGCCGAAG CCGCCTCACC CTACGGTCCT GGTCCCAGCC AAGCCATACC CTACCCGGCG
GCCCATGAGG CCAATCATGG CTGA
|
|---|
| Protein sequence | MMRRYLATPL LCLLLILPQL GWGEPAVQRY TCPMHPHYIA DQMGSCPLCG MDLVPLAAGE
RPTSSSPDNP RNAVTIAPET IQNMGVRYGI PQWTEFGRRI RAFGMVMENE RAQSVVASRV
AGWIEKLQVT AVGDTIQQGM ELYRLFSPDL VAAQRDLLSA AQQQGGGRLH AATQRLLALG
VERRLINRWI AEKSLSERVP FYAEGSGTLS RLEVRQGSYV KPGMTLAVIQ DYSRVWLNAS
VAEKDLSRIT KQTPVRVLLP HLPGRKVATK IDYIHPIIDA ASRTGTVRLL LDNQDGALRP
GAYADVLFEV GVDRRLALPD GALLNDAQGY HVVLALGEGR FQPKAVKVGL SSGGFTEILE
GLDEQQQVVI SGQFLIDSES ALGESFTKLE RLKPPLNQLA PTPAQLAMLD HLVDAALYIH
EAHIDGYAVE PTQLQPARDI KSLLWPHFGQ TRLGAILTQA EDALSRAQQA RTQAELLTAL
DQLVQALQPW IQQGAAQHYQ AKGLHLFQHQ GSPARYWLQL GAEAASPYGP GPSQAIPYPA
AHEANHG
|
|---|
| |