Gene Mmc1_3380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_3380 
Symbol 
ID4483316 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp4210440 
End bp4212668 
Gene Length2229 bp 
Protein Length742 aa 
Translation table11 
GC content56% 
IMG OID639724128 
ProductRecD/TraA family helicase 
Protein accessionYP_867272 
Protein GI117926655 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.586227 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTGGCA ATCCTTTAGA GCAGGGAGAG GGTGTGGAGA GCTTTTGTGG GCGTATTAAA 
CAGGTGGTCT TCCATAATCT GGAAAACGGT TATGCGGTGA TGGTGGTGCG CCCGGATGAG
GCCCCGGAGG AGACCCAGAC GGTGGTGGGG GTGTTGGCGG CCCCGGCGGC GGAGATGCGC
TTGTGTTTTC ATGGCCAATG GGAGAGCAAC GCCAAGTTTG GTCGGCAATT TAAGGCCGAG
CGCATGGAGC CCCTGGGGAC CACCCTGCGG GAGGCTATTG TACTGTTTTT GCAGAGTGGC
TCCATCAAGG GCATTGGCAA GACCATGGCC AACCGCTTGG TCGAGCGGTT TGGTGAAGCG
CTGTTTGAGG TGATGGATGA GCGTCCCGAA GCGCTGCTGG AGGTGCGTGG GGTGGGTAAG
GCCAACCATG GGCGTATCTT AAAAAATTGG CAAAAAGCAC GGGACGATGC CCAACTGATG
CTGTTGCTCT ATCAACTGGG TTTTGGTGCG GCTTTGACCC GCGCGGTCAG TAAATGCCTG
CGGGAAGCCG ATCCCCAAGC CGACCCCCTC AAGATGGTGC AAGAGAACCC CTATCTGTTG
GCGCAGGTGC GGGGCATCAC CTTTCAGCGG GCCGATGCCG CCGCTCTGCA ATTAGGGATG
CAGCGTTTGG ACCCGCGCCG TATTGAGGCG GGTATGCAGG AGATTTTAAT ACAATTGGCC
AATAATGAGG GGCACACCCT GCTAGAAGAG CCCCGTTTTC ACCAACAGCT AACGGTTTTG
TTGGCCTTAC AGGGGCACCA GGATCAGCTC AATTTGGTGC CCATGGTGTT GGAGCGTTTG
GATCTTGGTC AGGGGCCGTT GGTGCGGGTA TATGGTCGGG ATGGCAGCCC TTTTGTGCAG
CTTACCCGTT ACCATGACTA TGAAAAACAG ATTGCTTACC ATATCAGCCG TTTGCACGGG
CCAAGCCCCA TTGAGACCAT TAGCGATGGC TGGATTGAGC GGGTGAGTCG CGGCCATTTT
AGCCTCTCAG TGGATCAGCG TCAGGCGCTC AAGACCATTA CCCAGGACAA GGTCGCCATT
TTAACCGGTG GTCCTGGCAT GGGTAAGACC ACCATCACCC GCTATGTCAT TGAGCATGCC
GTAGAAAACA AGCAAACGGT TAAGCTGTGC GCCCCCACGG GGCGGGCGGC CAAGCAGTTG
GCCGAGGCTA CCGGGGAGGT GGCTTTGACC ATCCACCGTT TAATGGGCAA GGGCAGTGAT
GAGTCTGTGG ATGGTCAGCG TAAGTTTGAG TGTGATCTGC TGGTGGTGGA TGAGAGCTCC
ATGATGGATG AGTGGATGGC CAGTTCACTG CTACAGATGT TACCGGACCA CTGCCGCCTG
TTATTGGTGG GGGATGCCGA TCAGCTACCG TCGGTTGCAG CGGGGCGTGT GTTGCAGGAT
TTAATTCAGA GTGGGGTGGT GCCGGTGGCG CGCTTGACAG AGGTACACCG GCAGGCGGAG
GGTTCGGGTA TCGCCTTGGG GGCGGTGGAG ATTTTGCATG GGCGGCGTCC ACAGATGGCG
CGGGATTTTA AATTTGTGGC GGTTACGGGC GGCATGGAGC ATCTTCATCA GTGTGCCAAT
CGTATGCTGG AGGGCATAGA CAAGATGATG CGCGTGGGGG GCATTGATGG GGCGGAGATC
CAGGTGATTA CTCCCATGCA TGGTACCGAG GTGGGGGTAA AGGCGCTGAA CGAGCGGCTC
CATGAGCAGC TCAACCCCTA TCAGGCGGGG CAGGAGGTGT TGGAGTTGGA CGGCTTTGCC
TATCGGGCGG GTTGCCGCAT TATGCAGACC AAGAATGATT ATGATCTGGA GCTGTTTAAT
GGGGACCAAG GGGAGATTGT GGAGATCAGC AAGGATGCCC AGGGGGAGCT TCAGGTCATT
GCCAAATTTG ATGAGGCGCA AAAGCTGTTG GATCGGGAGC AGATGGGTAA CATTGTGCCC
TGTTACGCCA TTACTGTGCA TAAAAGCCAG GGTGGGCAGT TTAACTATGT GGTTACGCCG
GTGGTAACGG CCCATGGTAA GATGCTCTAT CGCAACCTGT TTTATACCTG TGTGACGCGG
GCGCGTAAGG GTGTGGTCTT GGTGGGCTCT TATGAGGCGT TGGTGATGGC GATCTCCTAT
AAGGAGAATA TGCAGCGCAA TACGGGTCTG TTGAGCCGTA TCGAGGAGCG CATGGGTGGT
GCAGTATAA
 
Protein sequence
MSGNPLEQGE GVESFCGRIK QVVFHNLENG YAVMVVRPDE APEETQTVVG VLAAPAAEMR 
LCFHGQWESN AKFGRQFKAE RMEPLGTTLR EAIVLFLQSG SIKGIGKTMA NRLVERFGEA
LFEVMDERPE ALLEVRGVGK ANHGRILKNW QKARDDAQLM LLLYQLGFGA ALTRAVSKCL
READPQADPL KMVQENPYLL AQVRGITFQR ADAAALQLGM QRLDPRRIEA GMQEILIQLA
NNEGHTLLEE PRFHQQLTVL LALQGHQDQL NLVPMVLERL DLGQGPLVRV YGRDGSPFVQ
LTRYHDYEKQ IAYHISRLHG PSPIETISDG WIERVSRGHF SLSVDQRQAL KTITQDKVAI
LTGGPGMGKT TITRYVIEHA VENKQTVKLC APTGRAAKQL AEATGEVALT IHRLMGKGSD
ESVDGQRKFE CDLLVVDESS MMDEWMASSL LQMLPDHCRL LLVGDADQLP SVAAGRVLQD
LIQSGVVPVA RLTEVHRQAE GSGIALGAVE ILHGRRPQMA RDFKFVAVTG GMEHLHQCAN
RMLEGIDKMM RVGGIDGAEI QVITPMHGTE VGVKALNERL HEQLNPYQAG QEVLELDGFA
YRAGCRIMQT KNDYDLELFN GDQGEIVEIS KDAQGELQVI AKFDEAQKLL DREQMGNIVP
CYAITVHKSQ GGQFNYVVTP VVTAHGKMLY RNLFYTCVTR ARKGVVLVGS YEALVMAISY
KENMQRNTGL LSRIEERMGG AV