Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_3380 |
Symbol | |
ID | 4483316 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 4210440 |
End bp | 4212668 |
Gene Length | 2229 bp |
Protein Length | 742 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639724128 |
Product | RecD/TraA family helicase |
Protein accession | YP_867272 |
Protein GI | 117926655 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.586227 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAGTGGCA ATCCTTTAGA GCAGGGAGAG GGTGTGGAGA GCTTTTGTGG GCGTATTAAA CAGGTGGTCT TCCATAATCT GGAAAACGGT TATGCGGTGA TGGTGGTGCG CCCGGATGAG GCCCCGGAGG AGACCCAGAC GGTGGTGGGG GTGTTGGCGG CCCCGGCGGC GGAGATGCGC TTGTGTTTTC ATGGCCAATG GGAGAGCAAC GCCAAGTTTG GTCGGCAATT TAAGGCCGAG CGCATGGAGC CCCTGGGGAC CACCCTGCGG GAGGCTATTG TACTGTTTTT GCAGAGTGGC TCCATCAAGG GCATTGGCAA GACCATGGCC AACCGCTTGG TCGAGCGGTT TGGTGAAGCG CTGTTTGAGG TGATGGATGA GCGTCCCGAA GCGCTGCTGG AGGTGCGTGG GGTGGGTAAG GCCAACCATG GGCGTATCTT AAAAAATTGG CAAAAAGCAC GGGACGATGC CCAACTGATG CTGTTGCTCT ATCAACTGGG TTTTGGTGCG GCTTTGACCC GCGCGGTCAG TAAATGCCTG CGGGAAGCCG ATCCCCAAGC CGACCCCCTC AAGATGGTGC AAGAGAACCC CTATCTGTTG GCGCAGGTGC GGGGCATCAC CTTTCAGCGG GCCGATGCCG CCGCTCTGCA ATTAGGGATG CAGCGTTTGG ACCCGCGCCG TATTGAGGCG GGTATGCAGG AGATTTTAAT ACAATTGGCC AATAATGAGG GGCACACCCT GCTAGAAGAG CCCCGTTTTC ACCAACAGCT AACGGTTTTG TTGGCCTTAC AGGGGCACCA GGATCAGCTC AATTTGGTGC CCATGGTGTT GGAGCGTTTG GATCTTGGTC AGGGGCCGTT GGTGCGGGTA TATGGTCGGG ATGGCAGCCC TTTTGTGCAG CTTACCCGTT ACCATGACTA TGAAAAACAG ATTGCTTACC ATATCAGCCG TTTGCACGGG CCAAGCCCCA TTGAGACCAT TAGCGATGGC TGGATTGAGC GGGTGAGTCG CGGCCATTTT AGCCTCTCAG TGGATCAGCG TCAGGCGCTC AAGACCATTA CCCAGGACAA GGTCGCCATT TTAACCGGTG GTCCTGGCAT GGGTAAGACC ACCATCACCC GCTATGTCAT TGAGCATGCC GTAGAAAACA AGCAAACGGT TAAGCTGTGC GCCCCCACGG GGCGGGCGGC CAAGCAGTTG GCCGAGGCTA CCGGGGAGGT GGCTTTGACC ATCCACCGTT TAATGGGCAA GGGCAGTGAT GAGTCTGTGG ATGGTCAGCG TAAGTTTGAG TGTGATCTGC TGGTGGTGGA TGAGAGCTCC ATGATGGATG AGTGGATGGC CAGTTCACTG CTACAGATGT TACCGGACCA CTGCCGCCTG TTATTGGTGG GGGATGCCGA TCAGCTACCG TCGGTTGCAG CGGGGCGTGT GTTGCAGGAT TTAATTCAGA GTGGGGTGGT GCCGGTGGCG CGCTTGACAG AGGTACACCG GCAGGCGGAG GGTTCGGGTA TCGCCTTGGG GGCGGTGGAG ATTTTGCATG GGCGGCGTCC ACAGATGGCG CGGGATTTTA AATTTGTGGC GGTTACGGGC GGCATGGAGC ATCTTCATCA GTGTGCCAAT CGTATGCTGG AGGGCATAGA CAAGATGATG CGCGTGGGGG GCATTGATGG GGCGGAGATC CAGGTGATTA CTCCCATGCA TGGTACCGAG GTGGGGGTAA AGGCGCTGAA CGAGCGGCTC CATGAGCAGC TCAACCCCTA TCAGGCGGGG CAGGAGGTGT TGGAGTTGGA CGGCTTTGCC TATCGGGCGG GTTGCCGCAT TATGCAGACC AAGAATGATT ATGATCTGGA GCTGTTTAAT GGGGACCAAG GGGAGATTGT GGAGATCAGC AAGGATGCCC AGGGGGAGCT TCAGGTCATT GCCAAATTTG ATGAGGCGCA AAAGCTGTTG GATCGGGAGC AGATGGGTAA CATTGTGCCC TGTTACGCCA TTACTGTGCA TAAAAGCCAG GGTGGGCAGT TTAACTATGT GGTTACGCCG GTGGTAACGG CCCATGGTAA GATGCTCTAT CGCAACCTGT TTTATACCTG TGTGACGCGG GCGCGTAAGG GTGTGGTCTT GGTGGGCTCT TATGAGGCGT TGGTGATGGC GATCTCCTAT AAGGAGAATA TGCAGCGCAA TACGGGTCTG TTGAGCCGTA TCGAGGAGCG CATGGGTGGT GCAGTATAA
|
Protein sequence | MSGNPLEQGE GVESFCGRIK QVVFHNLENG YAVMVVRPDE APEETQTVVG VLAAPAAEMR LCFHGQWESN AKFGRQFKAE RMEPLGTTLR EAIVLFLQSG SIKGIGKTMA NRLVERFGEA LFEVMDERPE ALLEVRGVGK ANHGRILKNW QKARDDAQLM LLLYQLGFGA ALTRAVSKCL READPQADPL KMVQENPYLL AQVRGITFQR ADAAALQLGM QRLDPRRIEA GMQEILIQLA NNEGHTLLEE PRFHQQLTVL LALQGHQDQL NLVPMVLERL DLGQGPLVRV YGRDGSPFVQ LTRYHDYEKQ IAYHISRLHG PSPIETISDG WIERVSRGHF SLSVDQRQAL KTITQDKVAI LTGGPGMGKT TITRYVIEHA VENKQTVKLC APTGRAAKQL AEATGEVALT IHRLMGKGSD ESVDGQRKFE CDLLVVDESS MMDEWMASSL LQMLPDHCRL LLVGDADQLP SVAAGRVLQD LIQSGVVPVA RLTEVHRQAE GSGIALGAVE ILHGRRPQMA RDFKFVAVTG GMEHLHQCAN RMLEGIDKMM RVGGIDGAEI QVITPMHGTE VGVKALNERL HEQLNPYQAG QEVLELDGFA YRAGCRIMQT KNDYDLELFN GDQGEIVEIS KDAQGELQVI AKFDEAQKLL DREQMGNIVP CYAITVHKSQ GGQFNYVVTP VVTAHGKMLY RNLFYTCVTR ARKGVVLVGS YEALVMAISY KENMQRNTGL LSRIEERMGG AV
|
| |