Gene Mmc1_3334 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_3334 
Symbol 
ID4480699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp4153054 
End bp4154586 
Gene Length1533 bp 
Protein Length510 aa 
Translation table11 
GC content53% 
IMG OID639724081 
ProductRNA polymerase, sigma 54 subunit, RpoN 
Protein accessionYP_867226 
Protein GI117926609 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTTTGG GTATGGAACT CAAGCTGCGG ATGGGTATGC AACTGGTGAT GACACCTCAG 
TTGCAGATGG CCATTCGGCT GCTACAGATG TCTAGCATGG ATCTTCAGGA GTATCTTCAG
GAGGAGTTGG AGAAGAATCC ACTGCTGGAG CGTGAAGACG AAAACGGCAA TGCGGTTGAT
GGCGATACAG CCCCTCTGGG TGAGGATGGC GCCGCCGTGG ATGGCGCAGG GCTGGATGGC
GAGAACTATA TGGAGTTTAT GGGCAACAAC AGCTCAACTG GAGAGATGGA TGGTTTCCAG
ATTGATGAGC CCCAGACCCC AGAGGTAACG CACCTGAGTG AGGATTTACC GTTGGATGCC
GAGTGGTCCG ACGTCTATTC GGATGCCGGT TCTAATTTTG AATCCCACAA CAATTCACTT
AATACCTCAG AAGCGCCACC GCTAGAGAAC ACCCTGGTGC GCAATGATAC GTTGTCGGAT
CATCTAATCT GGCAATTGGG GTTGTCGGCG CGGGATGAGC ACGAGCGAGC GTTGGGTATG
GCGTTGGTGG ATGCCATTGA TGAGAATGGC TACCTAACCG CACCGTTGGA GAGTTTTCAG
GAGACGACTG GGGCCAGTTT GGATGATCTG GAAGATGCCC TGCTCTTAAT TCAATCCTTT
GAACCCTCTG GGGTGGGTGC GCGCAACTTG GCGGAGTGTC TGTTGTTGCA GTTAAAGGCA
GACCGCATGG CGGTGGCCCC CTATACCTCA CTGTTGGCCC ATTTGGATGA TTTGGCGCGG
CGGGATTTTC GCAAACTCAG TCGGGTCTTA AAACTTAGTG AAGAGGATCT GGCCAGCGCG
GTGGCGGTGA TCCACGGTTT AGACCCCAAG CCGGGTCTGG CCTATGGCAG CGATCAAACC
AGTTATGTGG TGCCGGATGT CTACGTACGC AAGCAAAACG GTAAGTGGGT GGTGGAGATC
AATCCCGAAA CCCAACCACG GCTGCGCATT AATCGCCACT ATCAGGATCA AATTTCCCGT
TACGCTTCTG CCGATGACAA GCGGTTTATG ACCGAATCGG CCCGCAATGC CCAGTGGCTG
ATTAAATCGT TGGAGCAGCG CTCTTCCACC ATCTATCGGG TGGCTGAGAG CATTGTGCGT
TTTCAGGAAG ATTTCTTGGA CAAAGGACCC GAGTATCTAA AGCCATTGAT TCTCAAGGAT
GTGGCCGACG ATATTGGGGT ACACGAGTCA ACCACCAGTC GTGTGACCAG CAATAAGTAT
ATGCACACAC CACGGGGCAT CTTTGAGCTG AAATACTTTT TCAGCTCGTC GCTGACCTCG
CAGAGTGGCG AGTCGCACTC GTCGGAGGCG GTGAAGTTTA AAATTCGTAA GTTGGTGGAG
AGCGAGCCGT TGCGGCGCCC CTTCTCGGAC GAAAAACTGG CGAAAATGCT CAAAGAGCAG
GGCATCAATG TGGCCCGCCG GACGGTGGCG AAATATCGTG AGGCGTTGAA CATACCCTCT
TCGTCACGAC GTAAGCAGCT GGGTGAAAAG TAG
 
Protein sequence
MALGMELKLR MGMQLVMTPQ LQMAIRLLQM SSMDLQEYLQ EELEKNPLLE REDENGNAVD 
GDTAPLGEDG AAVDGAGLDG ENYMEFMGNN SSTGEMDGFQ IDEPQTPEVT HLSEDLPLDA
EWSDVYSDAG SNFESHNNSL NTSEAPPLEN TLVRNDTLSD HLIWQLGLSA RDEHERALGM
ALVDAIDENG YLTAPLESFQ ETTGASLDDL EDALLLIQSF EPSGVGARNL AECLLLQLKA
DRMAVAPYTS LLAHLDDLAR RDFRKLSRVL KLSEEDLASA VAVIHGLDPK PGLAYGSDQT
SYVVPDVYVR KQNGKWVVEI NPETQPRLRI NRHYQDQISR YASADDKRFM TESARNAQWL
IKSLEQRSST IYRVAESIVR FQEDFLDKGP EYLKPLILKD VADDIGVHES TTSRVTSNKY
MHTPRGIFEL KYFFSSSLTS QSGESHSSEA VKFKIRKLVE SEPLRRPFSD EKLAKMLKEQ
GINVARRTVA KYREALNIPS SSRRKQLGEK