Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_3334 |
Symbol | |
ID | 4480699 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 4153054 |
End bp | 4154586 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639724081 |
Product | RNA polymerase, sigma 54 subunit, RpoN |
Protein accession | YP_867226 |
Protein GI | 117926609 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTTTGG GTATGGAACT CAAGCTGCGG ATGGGTATGC AACTGGTGAT GACACCTCAG TTGCAGATGG CCATTCGGCT GCTACAGATG TCTAGCATGG ATCTTCAGGA GTATCTTCAG GAGGAGTTGG AGAAGAATCC ACTGCTGGAG CGTGAAGACG AAAACGGCAA TGCGGTTGAT GGCGATACAG CCCCTCTGGG TGAGGATGGC GCCGCCGTGG ATGGCGCAGG GCTGGATGGC GAGAACTATA TGGAGTTTAT GGGCAACAAC AGCTCAACTG GAGAGATGGA TGGTTTCCAG ATTGATGAGC CCCAGACCCC AGAGGTAACG CACCTGAGTG AGGATTTACC GTTGGATGCC GAGTGGTCCG ACGTCTATTC GGATGCCGGT TCTAATTTTG AATCCCACAA CAATTCACTT AATACCTCAG AAGCGCCACC GCTAGAGAAC ACCCTGGTGC GCAATGATAC GTTGTCGGAT CATCTAATCT GGCAATTGGG GTTGTCGGCG CGGGATGAGC ACGAGCGAGC GTTGGGTATG GCGTTGGTGG ATGCCATTGA TGAGAATGGC TACCTAACCG CACCGTTGGA GAGTTTTCAG GAGACGACTG GGGCCAGTTT GGATGATCTG GAAGATGCCC TGCTCTTAAT TCAATCCTTT GAACCCTCTG GGGTGGGTGC GCGCAACTTG GCGGAGTGTC TGTTGTTGCA GTTAAAGGCA GACCGCATGG CGGTGGCCCC CTATACCTCA CTGTTGGCCC ATTTGGATGA TTTGGCGCGG CGGGATTTTC GCAAACTCAG TCGGGTCTTA AAACTTAGTG AAGAGGATCT GGCCAGCGCG GTGGCGGTGA TCCACGGTTT AGACCCCAAG CCGGGTCTGG CCTATGGCAG CGATCAAACC AGTTATGTGG TGCCGGATGT CTACGTACGC AAGCAAAACG GTAAGTGGGT GGTGGAGATC AATCCCGAAA CCCAACCACG GCTGCGCATT AATCGCCACT ATCAGGATCA AATTTCCCGT TACGCTTCTG CCGATGACAA GCGGTTTATG ACCGAATCGG CCCGCAATGC CCAGTGGCTG ATTAAATCGT TGGAGCAGCG CTCTTCCACC ATCTATCGGG TGGCTGAGAG CATTGTGCGT TTTCAGGAAG ATTTCTTGGA CAAAGGACCC GAGTATCTAA AGCCATTGAT TCTCAAGGAT GTGGCCGACG ATATTGGGGT ACACGAGTCA ACCACCAGTC GTGTGACCAG CAATAAGTAT ATGCACACAC CACGGGGCAT CTTTGAGCTG AAATACTTTT TCAGCTCGTC GCTGACCTCG CAGAGTGGCG AGTCGCACTC GTCGGAGGCG GTGAAGTTTA AAATTCGTAA GTTGGTGGAG AGCGAGCCGT TGCGGCGCCC CTTCTCGGAC GAAAAACTGG CGAAAATGCT CAAAGAGCAG GGCATCAATG TGGCCCGCCG GACGGTGGCG AAATATCGTG AGGCGTTGAA CATACCCTCT TCGTCACGAC GTAAGCAGCT GGGTGAAAAG TAG
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Protein sequence | MALGMELKLR MGMQLVMTPQ LQMAIRLLQM SSMDLQEYLQ EELEKNPLLE REDENGNAVD GDTAPLGEDG AAVDGAGLDG ENYMEFMGNN SSTGEMDGFQ IDEPQTPEVT HLSEDLPLDA EWSDVYSDAG SNFESHNNSL NTSEAPPLEN TLVRNDTLSD HLIWQLGLSA RDEHERALGM ALVDAIDENG YLTAPLESFQ ETTGASLDDL EDALLLIQSF EPSGVGARNL AECLLLQLKA DRMAVAPYTS LLAHLDDLAR RDFRKLSRVL KLSEEDLASA VAVIHGLDPK PGLAYGSDQT SYVVPDVYVR KQNGKWVVEI NPETQPRLRI NRHYQDQISR YASADDKRFM TESARNAQWL IKSLEQRSST IYRVAESIVR FQEDFLDKGP EYLKPLILKD VADDIGVHES TTSRVTSNKY MHTPRGIFEL KYFFSSSLTS QSGESHSSEA VKFKIRKLVE SEPLRRPFSD EKLAKMLKEQ GINVARRTVA KYREALNIPS SSRRKQLGEK
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