| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3303 |
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| Symbol | |
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| ID | 4480667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 4116218 |
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| End bp | 4119514 |
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| Gene Length | 3297 bp |
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| Protein Length | 1098 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639724053 |
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| Product | tetratricopeptide domain-containing protein |
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| Protein accession | YP_867198 |
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| Protein GI | 117926581 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTA TAACGTTTTA CTCTTTTAAG GGGGGTGTGG GCCGCACTGC ACTGCTGATG
CATTTGGCGA TACAGTGGGC GGACCGGGGG GCTATTGTGG CGGTGGTGGA TATGGATCTT
CAGGCTCCTG GTCTGAGCTT TCATCCATGG CTGCAAGCCC ACAGCGACCC TAAACTGCAA
GAGCGTGGAA TGAGTGATCT ACTCTCCATC TACTACAGTG AGCAAGCACT TGAGCAGGAG
CCCCCTCTCT TTGGTTTTTA CCCCCCCAGC AAGCTTTTGC GAGAGGTCCG CGACCCCAGC
GGTAAATGGG GCAGTGGTGG CCGGCTCTAT GCCCTGCCCG CAGGGGGTCT AAGCCTACCC
CAAGCGGACC ACTATGAGCC CACGGCTGAT CATCATTTTC CAGCAGACAC TGACCGTGCA
GAGCGCACAA CGCCCCCCCC CGCCCAACGC ACGCTACACG CCTTTGCGGA CCGTTTTCGA
AAAGATTTGG AGCAATTTAA AACCCCAGAC AGCAAACGCC CCATTGACCT GCTCCTCATC
GACAGCCGTA CCGGTTATCT GGAGATGGAA GATCTGGCTG TGGGGTATCT GGCCGATCAA
GTTGTGCTCA TCTCTGGCCT AAATGGTCAA AACCTGCGTG GCCTAGCGCT TACCCTAAAG
GCTTTAAGAC CCCAACGCAT TCCTGCGGGG CAATTTGCCA ACCAGGCCCT TTGTGTCTTC
TCCCCGGTAC CAGCCCACTT GCATGACGAC CCCGCAGCCC TGGCGGCGTT ACAAACCGGT
TATGATCTGC TGGAAGAGGC GTGCATCCAA GAGGAGGGGC TGCAAGAGGA GCTACCCCCT
AAAGTATTCA CCCTACCCTA CACACCCCAT TTGGCCATAT CGGACATCCC TCTGCCCCGT
GGCAGTTCGC CTGCCGGAGC ACACCCTTAC TGGCAGAGTG TGGTGGAGAT CGCCAATGCG
TTACTGCCCC AGCAGCAGCC TGAGCAGTTA ATGGCGGAAC AACGCCAGGA GACAATCCGT
ACACTGGGCT TACATGCGCA CACCCCACGC GAGCCACGGA GCCAAGAGGG GCCTTATATG
GGGCCGCCAC TAAAACCCAG CTCTTCCAAC AACCGACCCT TGGCCAACCT TTTCCGACTG
CCTAAGTGGG ACTGGCCCTT TAAAAATTCT CCTGACCTTA AACGTACATG GCTCAGCAAG
GTGCCCTCAA GTAAGGGGCA CACAAAGCAG TTTGAACCTC TGCTCAATGG ACTTTGCATC
TCTCTCTCTT TGAAAATCGA AGAGAAGAAG AAAATCTTTG ATAATTTAGA CAATCTAAGC
CTGTACCAAC AAACAGAACT TGTGAAAATA TTCCAAGAAG AGCAGTACAA ACTTTCATCT
CTTGACGTAA AGCATGAAGA GCAACTCTTC ACCCAATTAT TTGAACATCA AAGAGCATGG
GCTGGCCTTA TGCTAGAGAG CCCAACGGCG GGGGATAGGG CGCTTTTAGA GTGGCCTTTA
GAGGGCACCG ATGCCTTTAT TGCTTGGCGG GAGACACCCT ACTACTGGCG GGCTATTCTG
GAAAATGTCA TCCATGGAAG CGATCTACTT AAAGAGGCGC GGCACGCTAC CCTACAGGCT
GGCATAAAAA GGGCAGGCCA ATATATACAC AAGCAATGGA AACCCCATTC TTTGCAGGGG
GTTTTATCGC TGATTGAATT AATTCACCAG CATGCCCCTG ACTTGACCAC CCCCCTGTTA
GAACGCGTAA AAACGCTGGC CGACTTGGAC CATACAGGCA CGGCTTGGCG GAGTGTTGCC
CAGTTCTACC AGCATGTTAT TCGATGTGAT GGCTCCGCCA GCTCAGCTTA TGAACAAGCG
CTGGCAAAAA ATCCGCAGGA TGCGTGGACA GCGGCTGATT TTGCACAGTT TTTAGCCCAA
TCAGGCAAAG ACCTAGAACG GGCCGAAGCG CTTTACCAGC AAGCCATCGA GGTCGACCCG
AATGACGCCG GCATCCTCAA CAACTTTGCC CTCTTCATGA CCGATAAAAA GGGTGATCAT
GCGCAGGCTG AAATTCTCTA CAACAGAGCC ATCGAGGCCG ATCCAAATGA CGCCATCGCC
CTAGGCAATT TTGCTCACTT CATGACCAAG ATTAAGAGCG ATCATGCGCA GGCTGAAATT
CTCTTCAACA GAGCCATCAA GGCCAATCCG AATCACGCCA AAGCCCTAGG CAATTTTGCT
ACCGTCATGA CCAAGATTAA GAGCGATCAT GCGCAGACTG AAATTCTCTT CAACAGAGCC
ATCGAGGCCG ACCCGAATGA CGCCAAAGCC CTAGGCAATT TTGCTACCTT CATGACCAAT
ATAAAGGGGG ATCATGCGCA GGCTGAAATT CTCTTCAACA GAGCCATCGA GGCCGATCCG
AATAATGCCA ACAACCTAGG CAATTTTGCT CACTTCATGA CCAATATAAA GGGGGATCAT
GCGCAGGCTG AAAGACTCTA CAACAGAGCC ATCGAGGCCG ATCCGAATCA CGCCAACAAC
CTAGGCAATT TTGCCCTCTT CATGACCAAT ATAAAGGGGG ATCATGCGCA GGCTGAAATT
CTCTTCAACA GAGCCATCGA GGCCGATCCG AATCACGCCA ACAACCTAGG CAATTTTGCT
CACTTCATGA CCGATAAAAA GGGGGATCAT GCGCGGGCTG AAATTCTCTA TACCAGAGCC
ATCGAGGCCG ATCCGAATAA CGCCAAAATC CTCAACAACT TTGCTAACTT CATGACCTAT
ATAAAGGGGG ATCATACGCA GGCTGAAATT CTCTACAACA GAGCCATCGA GGCCGCTCCA
AATAACGCCA ACGCCCTAGG CAATTTTGCC CTCTTCATGA CCAATATAAA GGGGGATCAT
GCGCAGGCTG AAATTCTCTT CAACAGAGCC ATCGAGGCCG ATCCGAATCA CGCCAACAAC
CTAGGCAATT TTGCTTGGTT TTTGCTCGGT CGCGGACGCC TTGAAGAGGG ACGCCTCCAA
TTAGAAAAAT CGCTCTCGCT CCAACAAGAA GAGGCGGATC CTACCCTGCA AGCTGAGACC
CGCTTTTATC AATACGCTCT TGGCCCGGCC CACCAGCGCA GCGAAGCCCT GGCTGTACTG
CGGCGGGTAC TCATGGAGAA ACAAGGGCGC TCTCCAGGGT GGGATTTTGC TGGCATCCTT
GAACAAGCTG AGCAAAGGGG CCACCCCCAT TACCCGTGGT TAATCCGCTT GGCCCAGGTA
ATCTCTGCCG GTGCACCCGT AGAAACCCTA GAGCCATGGC CCGACACCAC GACTTGA
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| Protein sequence | MKIITFYSFK GGVGRTALLM HLAIQWADRG AIVAVVDMDL QAPGLSFHPW LQAHSDPKLQ
ERGMSDLLSI YYSEQALEQE PPLFGFYPPS KLLREVRDPS GKWGSGGRLY ALPAGGLSLP
QADHYEPTAD HHFPADTDRA ERTTPPPAQR TLHAFADRFR KDLEQFKTPD SKRPIDLLLI
DSRTGYLEME DLAVGYLADQ VVLISGLNGQ NLRGLALTLK ALRPQRIPAG QFANQALCVF
SPVPAHLHDD PAALAALQTG YDLLEEACIQ EEGLQEELPP KVFTLPYTPH LAISDIPLPR
GSSPAGAHPY WQSVVEIANA LLPQQQPEQL MAEQRQETIR TLGLHAHTPR EPRSQEGPYM
GPPLKPSSSN NRPLANLFRL PKWDWPFKNS PDLKRTWLSK VPSSKGHTKQ FEPLLNGLCI
SLSLKIEEKK KIFDNLDNLS LYQQTELVKI FQEEQYKLSS LDVKHEEQLF TQLFEHQRAW
AGLMLESPTA GDRALLEWPL EGTDAFIAWR ETPYYWRAIL ENVIHGSDLL KEARHATLQA
GIKRAGQYIH KQWKPHSLQG VLSLIELIHQ HAPDLTTPLL ERVKTLADLD HTGTAWRSVA
QFYQHVIRCD GSASSAYEQA LAKNPQDAWT AADFAQFLAQ SGKDLERAEA LYQQAIEVDP
NDAGILNNFA LFMTDKKGDH AQAEILYNRA IEADPNDAIA LGNFAHFMTK IKSDHAQAEI
LFNRAIKANP NHAKALGNFA TVMTKIKSDH AQTEILFNRA IEADPNDAKA LGNFATFMTN
IKGDHAQAEI LFNRAIEADP NNANNLGNFA HFMTNIKGDH AQAERLYNRA IEADPNHANN
LGNFALFMTN IKGDHAQAEI LFNRAIEADP NHANNLGNFA HFMTDKKGDH ARAEILYTRA
IEADPNNAKI LNNFANFMTY IKGDHTQAEI LYNRAIEAAP NNANALGNFA LFMTNIKGDH
AQAEILFNRA IEADPNHANN LGNFAWFLLG RGRLEEGRLQ LEKSLSLQQE EADPTLQAET
RFYQYALGPA HQRSEALAVL RRVLMEKQGR SPGWDFAGIL EQAEQRGHPH YPWLIRLAQV
ISAGAPVETL EPWPDTTT
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