| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3212 |
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| Symbol | |
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| ID | 4481645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 3994710 |
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| End bp | 3996287 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639723961 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_867108 |
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| Protein GI | 117926491 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACAGC AGCCGCGCTG GAAACTGTAT CTGGTAGTAT TGGTGGCACT GGGTTCCATC
TACTATGCCC TGCCCAGCCT CTTGGGTGGC AACCTGCCCA GTTGGATGCC CAATAAGGTG
ATTCATCAAG GGTTGGATCT GCAAGGGGGA CTCTATCTAC TCTACGATGT CAAAGTCGAA
GAGGCCATCA AACAGGCGGG CAACAATATG GTGGATAGTG CCCGGAACCT GTTGCGCAAA
GAGCGGCAGC GCTATCGGGG CATTGAGCAG GTTGGGGCAG ATCAGGTGGT GATTCGACTC
ACCCCCAACT CCGATACAGA GCGCATGCTC AGCGTGCTCA AAGATGAGTT GCGCGAGTCC
AAGGTGGAAC ACTTCCAACC CGAAGCACAG ATCCGCCTAA CCCTTGGTGA GGCCGAGAAG
GTCGAGATAC GCAAATTTGC CGTGGATCAG GCCATCGAAA TTATTCGTAA CCGGATTGAC
GCCTTTGGCG TCTCAGAGCC CAGCATTCAA AAACAGGGGG AGCGGCGCAT CATTGTGCAG
CTCCCCGGTA TTAAAAACCC CGATCGGGCC AAGGGGCTGA TCGGTCGCAC CGCACGGCTG
GACTTTAAAC TGGTTAACGA AAAGGGTGAT CTTAACCGCG CCCTGGAGGG ACAAGTTCCC
GCCGATAGCG AGTTGATGTA TGAAGAGCGT AGCGCCAACC AAGGGGGCAA AAGCGCCTAC
CCTCTGCTGG TGTTTAAACG CACCATCCTC TCGGGGCAGC ATATCCAAAA TGCCCAGACC
ACCTTTAATG AGTATAACGA ACCCATCGTT TCAGTAAAAT TTGATGCGGT GGGGGGACGT
AAATTCTCGC AGATTACCGG TGAACATATC AAAGAGCGGT TGGCCATTGT GTTGGATGGC
AAGGTGCAGT CCGCACCGGT GATTCAGGAT AAGATCGCGG GTGGTCGTGC CACCATCTCT
GGCTCCTTTA CCCGTGAAGA GGCCCACGAT CTGGCCATCG TGCTGCGGGC GGGCGCCCTA
CCGGCCCCGC TGGTGATTTT GGAAGAGCGC ACCGTTGGTC CCACCTTGGG GGCCGATTCA
GTGGCGCAGG GTCTAAACTC GGTCTTGATC GGCGGTGTGT TGGTGGTGCT GTTCATGGTG
CTCTACTACA AGGGCTTTGG CATGCTGGCC AATCTGGCGG TGGTGCTTAA CGTGACAATC
CTGGTCTCGC TGTTGGCGCT TATGCAGGCC ACCTTAACCC TGCCCGGTAT TGCCGGTGCG
GTGCTGCTGT TGGGTATGGC GGTGGATGCC AATGTGCTGA TTTTTGAGCG CATTCGTGAA
GAGTTGCGCT TGGGTAAATC ACCATTGGCG GCCATTGATC ACGGCTATAG TAAGGCCTTC
TCCACCATTT TGGACGCAAA CATCACGACC CTGATTACGG CGGTGATCCT CTATCAGTTT
GGCACCGGTC CTGTGCGTGG GTTTGCGGTG ACGCTCTCGG TGGGTCTGTT GGCCTCCATG
TTTACGGCGA TCTTCGTTAC CCGGGTGGTG CTGGCCGAGG TGGTGAAAAA CCGTCGTTTG
AAAACGCTGA GCATCTAA
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| Protein sequence | MRQQPRWKLY LVVLVALGSI YYALPSLLGG NLPSWMPNKV IHQGLDLQGG LYLLYDVKVE
EAIKQAGNNM VDSARNLLRK ERQRYRGIEQ VGADQVVIRL TPNSDTERML SVLKDELRES
KVEHFQPEAQ IRLTLGEAEK VEIRKFAVDQ AIEIIRNRID AFGVSEPSIQ KQGERRIIVQ
LPGIKNPDRA KGLIGRTARL DFKLVNEKGD LNRALEGQVP ADSELMYEER SANQGGKSAY
PLLVFKRTIL SGQHIQNAQT TFNEYNEPIV SVKFDAVGGR KFSQITGEHI KERLAIVLDG
KVQSAPVIQD KIAGGRATIS GSFTREEAHD LAIVLRAGAL PAPLVILEER TVGPTLGADS
VAQGLNSVLI GGVLVVLFMV LYYKGFGMLA NLAVVLNVTI LVSLLALMQA TLTLPGIAGA
VLLLGMAVDA NVLIFERIRE ELRLGKSPLA AIDHGYSKAF STILDANITT LITAVILYQF
GTGPVRGFAV TLSVGLLASM FTAIFVTRVV LAEVVKNRRL KTLSI
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