| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_3161 |
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| Symbol | |
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| ID | 4483265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 3934780 |
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| End bp | 3937905 |
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| Gene Length | 3126 bp |
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| Protein Length | 1041 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639723910 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_867057 |
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| Protein GI | 117926440 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.362215 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000213823 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGATGTCGA GTTTCTTTAT TGACCGTCCG GTTTTTGCCT GGGTGATCGC CATTGTCATT
ATGCTGGCTG GGGTCTTGTC CATTTTACGT CTGCCGGTGG AGCAGTACCC TAACATTGCG
CCACCCTCAG TCTCCATTAA CGCCAGCTAT CCTGGTGCTT CGGCTGAGAC CCTGGAAAAT
AGCGTCACCC AAATTATTGA GCAGAGCCTG ACGGGCATTG ACCATATGCG CTATTTCTCC
TCCAGCAGCG ATGCTTCGGG GATGGCGAGT ATTACCATCA CCTTTGAGCC CGAGGCGGAC
CCGGACACCG CACAGGTGCA AGTGCAGAAT AAACTTCAGG CGGCCATGCC GCTACTTCCC
CCCGAAGTGC AGCAGCAGGG GGTGAGTGTC ACCAAGGCCA ACAACAGCTT TTTGATGGTG
GCCGGTTTTT ATTCGGAGGA TGGTTCCATC TCCCAGATGG AGCTGGGGGA TATGCTCAAC
TCCAAGGTGA AAGATGCCAT TGCCCGAGTT AATGGGGTGG GTAGTGTGAC CATCTTTGGC
GAGCCCCATG CCATGCGAAT CTGGCTGGAT CCACGCAAAC TGTTTAGCTA CAACCTCACG
GTCATGGATG TGCAACAGGC CATTCGTGCC CAAAACAGCG ATATTTCCGC CGGTCAATTG
GGCGGCCTGC CTGCGCGCAA GGGACAACAG CTCAACGCCA CCATCACCGC CCAATCGCGG
TTGCAAAGCG TGGAGGATTT TCAACGCATT TTACTGCGTG TCAATACCGA CGGCTCCCAG
GTGCGGTTGC AGGATGTGGC TCGGGTGGAG CTGGGGGCCC AAAGCTATGG TCGGGTGGTG
CGCTACAAAC GTTTGCCCGC AGCGGGTGTG GCGGTAAGCT TGGCCTCTGG GGCCAACGCC
TTGGATACCG CAGCAGCGGT CAAGGCGCGG ATTGCAGAAC TGTCACAGAC CCTGCCGGCC
AAGGTTAAAA TTATTTATCC CTATGACACG ACCCCCTTTG TTAAGCTCTC GATCAAAGAG
GTGATCAAAA CGCTGGTGGA GGCCGTGTTT TTGGTGTTTG TGGTGATGTT TTTGTTTTTA
CAGAACTTTC GCGCTACCCT TATCCCCACC ATCGCGGTGC CGGTGGTGCT GTTAGGCACC
TTTGGGGTGC TGTCAGCCTT TGGTTTTTCC ATCAACGTGT TGACCATGTT TGCCATGGTC
TTGGCCATTG GTTTGTTGGT GGATGACGCC ATTGTGGTGG TGGAAAACGT CGAACGCATT
ATGGAGCATG AAGGGCTCTC GCCCCGTGAG GCTACCCGTA AATCCATGCA GCAGATCACC
GGCGCATTGG TGGGGATTGC CTTGGTGTTG TCGGCGGTGT TTGTGCCCAT GGCATTCTTC
AGCGGCTCAG CGGGGGCGAT CTATCGCCAG TTTTCTATCA CCATTGTCTC GGCTATGACC
CTCTCGGTGG TGGTGGCGTT GGTGCTTTCG CCCTCGTTGT GTGCAACCTT TCTTAAACCC
GCCGTAAAGG GGGAGCATAG TCACGGATTT TTTGGCTGGT TTAACCGTAC GTTTAATGCT
GGACGGGAGC GGTTTGTGAC CAGCGCGGGC TATATTGCCG CCCGAGTGGG TCGCTTTACG
CTGATCTATG GGCTGCTGGT GGGGGGCATG CTCTATCTGT TTATGGGTCT GCCCAGCTCC
TTTTTGCCCA ACGAAGATCA AGGCACCATG TACCTCATGG CCAGTGCCCC TGCGGGCTCC
ACCGTGGAAC GTACCATGGA GAGTGTGGAG CAGATTGAGG ACTATTTTCT CGAACATGAA
ACCGAGAATG TGCGACATCT ATTTACTGTA ACCGGGTTTA GCTTTGCGGG ACGGGCGCAA
AATGTGGCGC TGGGTTTTGT GGGGCTGCGG GATTGGAGCG AGCGCAGCCG TAAGGATCAA
TCGGTATTTG CCCTGTCGGG ACGGGCCATG GGGGCCTTTG CGGGCATTAA AGATGCCCGT
GCCTTTGCCT TTTATCCCCC TCCTATCCGT GAGCTGGGTA ATGCGGCAGG CTTTGACGTG
CAGCTGGTGG ATCGGGCCGG TTTGGGGCAT GCAAAATTGA TGCAGGCCCG CAACCAGCTT
TTGGGGATGG CGGCTAAAAA TCCCAAACTC CAGGGGGTGC GTCCCAATGG CTTGAACGAT
GTTCCCCAAT TCACGGTGGA TATTGATCAT GAAAAAGCCA GCGCCCTAGG GCTCTCCATC
GCCGATATTA ACCAGACCTT GCAAACCGCT TGGGGATCGG CCTATGTCAA TGATTTTCTG
GATAAAGGTC GTATAAAACG GGTTTATATT CAAGGGGATA CTCCCTACCG CATGATGCCC
GCAGACCTGG ACCAATGGTA TGTGCGCAAT ACCCAGGGCA AGATGGTTCC ATTCGCGGCT
TTTTCCACGT CTCGGTGGAG CTATGGCGCA CCCAAGCTGG AGCGCTTTAA TGGGAGTGGC
TCGGTCAATA TTCAGGGCTC CGCTGCCCCC GGCGTGAGTA CCGGTACCGC CATGCAGGAG
ATCGAACAGA TGCTCCAGAA GCTGCCCGCT GGGATTGGCT TGGAGTGGGT TGGACTCTCC
TACGAAGAGC AGCGCTCGGG TGCGCAAGCG CCGATCCTGT ACGCGGTATC CATCTTGTTT
ATCTTTTTGT GTCTGGCGGC GTTGTATGAG AGCTGGTCGG TGCCCTTTTC CGTCATCCTT
AGTGTCCCGC TGGGGATTTT GGGTGCGGTG TTGGCGGCCA AAAGCTATGG TTTGAACAAT
GATGTCTACT TTCAGGTAGG TCTGCTTACC ACCATGGGTT TGGCTTCCAA AAATGCCATT
TTGATTGTGG AGTTTGCTAA AAAACAGTAT CAGGCTGGCA TGGACCTCCG GACTGCTACC
CTGATGGGGG CCAAACAGCG TTTTCGCCCC ATTATCATGA CATCCATGGC CTTCGTTTTG
GGGGTATCCC CGTTGGCCGT GGCCAATGGA GCCGGTTCGG CCAGCCAAAA CGCCATCGGT
ATTAGCGTGG TGGGGGGGAT GCTGGCGGCG ACCTTTATTG CGATCTTTTT TGTGCCGATG
TTCTATATGG GCATACAACG CCTCGCGCGC GCCCCAGAAC AGCTCAAGCA GGAGGTTGCT
CCGTGA
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| Protein sequence | MMSSFFIDRP VFAWVIAIVI MLAGVLSILR LPVEQYPNIA PPSVSINASY PGASAETLEN
SVTQIIEQSL TGIDHMRYFS SSSDASGMAS ITITFEPEAD PDTAQVQVQN KLQAAMPLLP
PEVQQQGVSV TKANNSFLMV AGFYSEDGSI SQMELGDMLN SKVKDAIARV NGVGSVTIFG
EPHAMRIWLD PRKLFSYNLT VMDVQQAIRA QNSDISAGQL GGLPARKGQQ LNATITAQSR
LQSVEDFQRI LLRVNTDGSQ VRLQDVARVE LGAQSYGRVV RYKRLPAAGV AVSLASGANA
LDTAAAVKAR IAELSQTLPA KVKIIYPYDT TPFVKLSIKE VIKTLVEAVF LVFVVMFLFL
QNFRATLIPT IAVPVVLLGT FGVLSAFGFS INVLTMFAMV LAIGLLVDDA IVVVENVERI
MEHEGLSPRE ATRKSMQQIT GALVGIALVL SAVFVPMAFF SGSAGAIYRQ FSITIVSAMT
LSVVVALVLS PSLCATFLKP AVKGEHSHGF FGWFNRTFNA GRERFVTSAG YIAARVGRFT
LIYGLLVGGM LYLFMGLPSS FLPNEDQGTM YLMASAPAGS TVERTMESVE QIEDYFLEHE
TENVRHLFTV TGFSFAGRAQ NVALGFVGLR DWSERSRKDQ SVFALSGRAM GAFAGIKDAR
AFAFYPPPIR ELGNAAGFDV QLVDRAGLGH AKLMQARNQL LGMAAKNPKL QGVRPNGLND
VPQFTVDIDH EKASALGLSI ADINQTLQTA WGSAYVNDFL DKGRIKRVYI QGDTPYRMMP
ADLDQWYVRN TQGKMVPFAA FSTSRWSYGA PKLERFNGSG SVNIQGSAAP GVSTGTAMQE
IEQMLQKLPA GIGLEWVGLS YEEQRSGAQA PILYAVSILF IFLCLAALYE SWSVPFSVIL
SVPLGILGAV LAAKSYGLNN DVYFQVGLLT TMGLASKNAI LIVEFAKKQY QAGMDLRTAT
LMGAKQRFRP IIMTSMAFVL GVSPLAVANG AGSASQNAIG ISVVGGMLAA TFIAIFFVPM
FYMGIQRLAR APEQLKQEVA P
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