Gene Mmc1_2990 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_2990 
Symbol 
ID4482718 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp3741300 
End bp3742604 
Gene Length1305 bp 
Protein Length434 aa 
Translation table11 
GC content50% 
IMG OID639723737 
Productouter membrane efflux protein 
Protein accessionYP_866887 
Protein GI117926270 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000136016 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTTTGA AACGTTTCGT TAAAAACGCC ATCGTCGTCG GCGTCGCTTC GGTCTCTATG 
GTCGGTGTGG CGCAGGCCAA CGATCTTCCC GAGTTGTTGC GCGGGTTGAT CCAAACCAAT
GCGGAGGTAA AATCTGCTGA AGCCAAGCTT GGCGGCGCGA AAAGCGACGT CAGCTCCAAA
AAAGGTGAAT GGTTTCCAAC CGTCACTGTG AACGCAAAAA TTGGTCATGA GGGTACCAAC
CAAGGGGCGA CACCCTTTAC TGATGCGCGT TCTAGTGAGC TGAAAACCAG CTTTGATCAG
TTGTTGTGGG ACTTTGGTCA GCTGAATGCC GAAATAGACG CCGAGCGTGC CAACCAAATC
GGCAAAGAGT ACTCGGTCAG TCAAACGACC CAAAAAGTGC TGCGTTCCGG TGCCAAGGCT
TACATCGATT TGGTTGCCGC TTACCGCGTG CTGGAAAATA CCAAAGCGGT AGAGGGCCGT
ATTCGTGAAC AGACCGCTTC CGAAGAAAAG CGTCTAAAAA TCGGTGCTGG CTTGCGCAAA
GATGTTTTGC AAAGCGAGGC TGAGCTAAGC CGGGCCATCG AAAAGCGGTT AAAAGCGGAG
CTGAATTTGG CGAAGGCCAT GAACGGCTAT CGCCAGTGGT TCAATGTTGT GCCTGACGAT
CTCTCTAAAT TGAACATGGT CGATGTCAAC GTTGAGATTC CCTCAATGGA GGACATGATT
GCGCAGTTTG AAGCCCAAAA CTACGCCTTG CTTGAGACAA AGCAAAACAT CGTTAAGGCT
GTCGCGAGCA AAAATTCTAC CCGCGCCAAA GGCTATTTTC CTGAGGTTAC GCTGACGGGT
AGCTATACCT TCCAAAACGA TATGGGGGGC ACTGTAAACT ATGATGAGGA CACCTCCATC
CTCGTCAATG TCAAGATGCC TTTCAACTTG GGCCTTGCTG CGGTGCACGA TGTTAATTCG
GCACAGCATA AAGTGGAGGA TTTTCAGGCT ATTCACGACA AAGCTCGTGA TGCGTTAGAG
AAAAATCTTC GTGATACCTA CCAAAAGCTG ATTACGAGCA AAGAGTTAGT CGATCGTTAT
CAGCAAAGTG TTAAGTTGAA CGAGGATTTT CTGACATTGG CCCGCAAAGA GCGCAAGCTT
GGTGGTGGTA GCATGTCTTC TCTGCTTAGT ATTCTCATTG CTGAGCGCAA AGTGATTGAA
GCGAACTCTG ACCTAGAAGA ATCCAAGGCA GACGTGGTGA GTGCAAAGGT TGAGCTCCTC
GAAGCCATTG GACGCCTGAG CCCCGATCTG TTTGTGCAAC AGTAA
 
Protein sequence
MLLKRFVKNA IVVGVASVSM VGVAQANDLP ELLRGLIQTN AEVKSAEAKL GGAKSDVSSK 
KGEWFPTVTV NAKIGHEGTN QGATPFTDAR SSELKTSFDQ LLWDFGQLNA EIDAERANQI
GKEYSVSQTT QKVLRSGAKA YIDLVAAYRV LENTKAVEGR IREQTASEEK RLKIGAGLRK
DVLQSEAELS RAIEKRLKAE LNLAKAMNGY RQWFNVVPDD LSKLNMVDVN VEIPSMEDMI
AQFEAQNYAL LETKQNIVKA VASKNSTRAK GYFPEVTLTG SYTFQNDMGG TVNYDEDTSI
LVNVKMPFNL GLAAVHDVNS AQHKVEDFQA IHDKARDALE KNLRDTYQKL ITSKELVDRY
QQSVKLNEDF LTLARKERKL GGGSMSSLLS ILIAERKVIE ANSDLEESKA DVVSAKVELL
EAIGRLSPDL FVQQ