| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2972 |
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| Symbol | |
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| ID | 4483490 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 3688084 |
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| End bp | 3691488 |
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| Gene Length | 3405 bp |
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| Protein Length | 1134 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639723719 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_866869 |
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| Protein GI | 117926252 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.56424 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGTT TAACCCATAA GCTGGTGATC TTTGTTAGCG CTCTGGTGGT GGTCGTGGTG
GCCATTTCTG GCTGGTTTGC CTATGAGCAG ACCCGACATT TGCTACTAGA GCGCGCGCTC
CCGTCGCTGC GGGCAAAGGT TGAAGCATCC ATGGGCGATT TTTTAAAGCC CTATGCCGCC
GCTCATGGCC CGTTGCAACT GTTGGCGACA GCGCCTTCCA TGCAGGCGTT GCTGCGGGCA
AAACTGGCGA TGGATGTAGA CCAGCAAAAG ACTCAAGTTC TCCTGAGGGA TGTGGAGAAC
TTGTTGCAAA ACTATATAAA ATTTTACCCA GACACTTGGC AAATCCGTCT GGAAGGCGTC
GCCACAAACG GTGCGGCTTG GTTGATAGTG GTACCCGCTG GCGCGCAGCC AATCGCGGTG
GTAGAGGATA AACTGGGACA AACCAACCAG GGTGGTGAGC CTGAGGCGTC GCCCTTGCGC
GCGGGAGAGG TGCGCTATTC CGCCATTGAA AGCGATATCT CCCAGGGCGC TGAGGGAAAG
CCCTCTCAAG CAGGTCTAAG CATGACCCTG CGGGTGGATT ATGCGGGTCA GCCAGCAGCT
CGATTGGTTG TATATCAAAA ACTTACGCAT TCTTTGGAAC AGCTTCGCGG CGCTTTGGCG
GGTGCCGGTC AACTCTACGT GGTGGAGCCC CGTCATTTTA GGTATGTTGT CCATCCAGAT
CGGGCAAAAC AGCTTGGACA AACCCTCGGC ACGGTTTGGG GATTAAGCGA AGAGTTCCCT
CTGCTGGCCG AAGGCTTGGC CGCCTTACAA TCGGTGCAGA CTGGTGGCCG TTCGCTGCAA
CGGGAAGATG GGGAACACTT GGTGCATATG GCTTGGTACA CCGTGGGCCA AGCTGGCCGT
GGGGCGGATG TGGGGGTTAT TTATCGCCTA CCACGACAAG CGGTGCTGGG CGCTTTTGAT
GCGCTTGTCC AGCGTAGCTT GTGGATCAAC TTGGCGTTGG TGATGGTTGC GCTGTTGGGC
AGTGCCCTGT TTGCTGGTTC GGTAACAAGA CCATTGCGCC ATCTTGCGCA GGTAATCTCC
GGTTATGGTC GGGGAGAACA TCTACCGCTG CAATACACAG AGCGTAGTGA TGAGGTAGGG
CAAATCGGTG AGACCTTTTT GGAGATGCGA CAGGCCATTG AAGCCCGAAC CCAAGCTTTA
GAGGAAGAAG AACAACGGCT TAATTCACTG TTTGAAAGTG CCGTGGATGG CATTCTTATC
ATTGATGCGA AAGGTATAAT CCAACGCTAC AATGCCGGTG CGTGCAAGCT GTTTGGATAC
ACCTCTAAAG AAGCGCTGGG GAAAAATGTC TCCCTGTTGA TGCAGGATGT GGTGGGACAA
GAACATGATC TGTTCATTAC CCGCTTTTTG CAAGAGGGTG GCACGCGGGT GGTGGGCAAT
AGTCGTGAGG TGGAGGCGCG TCATAAAGAT GGTAGTGCGC TGCCGGTGCA GCTCTCGGTC
AGTCACTTTA AGTATGCCGG GGAGGACTAT TTTACCGGTA TATGCCACGA TCTGCGCCAC
CAGCATTGGT TGCAGAGTGC CTTGAAAATG GCCAACGATC ACTTAGAGAG CCAGGTTGCC
GAACGCACCG AGGATCTTAC CCAGGCCAAT CAGGCACTCC AGCAAGAGGT GGCGGAACAC
CAACTAACCC AGGCCAAGCT GTTTTTGGTG AATCAAGTTT TTGAAAAAGC ACGGCAGGCG
ATTGTTATTA CAGATCATAA TAATAAAATA TTGGATGTTA ATCCCGCCTA TGAGGCGTTG
ACAGGGTTTC AGAAACAGCA GGTCGTGGGT CATGATCCTG CGGTGGGTAA GTCGGGGCGG
CACGATCCTG CTTTTTACGC CCGCATGTGG CGCAGCTTGT TGTCAGAAAA TCATTGGGAA
GGTGAGGTGT GGGATCGCCG CTCCGATGGT TCGATCTATC CAAAATATTT AAGTATTGAC
CGTGTGTTGG ATCGTCAGGG TAGCGTGCTT AACTATGTGG CCATGTTCCA GGATTTAACC
GAGCAAAAAG CCACGGAGGA GGAGTTGGAG CGGCTCTCCC ACTACGATCC GTTGACGGGC
CTGCCCAACC GGGCGCTCTT TCGCAATCGT CTCGAACATG AGTTTTTGGT GGCACGGCGG
CATAATCGCA GTGTGGCGCT GGTTTTGATT AATCTGGATC GCTTTAAACA GATTAATGAC
TCCTTTGGCT TTACGGTGGG GGATCGGTTG CTGGCGATGG TGGCCAAGCG GCTGGAGCAA
CTGGTACGCA AAACCGATCT GATCGCCCGC CAAGAGAACC GTCAGGAGCG TGATTCGGAT
ACCCTCTCTC GCTTGGGGGG GGATGAGTTT TCCATTATTT TGGCCGAGTT GCGGGCGGCG
GAAGACGCCG CCATCGTGGC CCGGCGTACG GTGGCGTTAT TAGAAGAACC CTATGACATC
GAGGGGCAGG AGGTGTTTTT GGGCGGTAGC TTGGGGGTCT CTATCTACCC AGAAAATGCC
GAGAGTCTAA ATGGTATGAT CCAGTGTGCC GAACGCGCCT TGGTTAAAGC CAAGGAGGGC
GGGCGCAACA CCTTCCGCTT TTATTCAGAG GAGATGAACC GCCACAGTGC TGAGCAGGTG
CGGTTGGAAA CGGAGCTGCG CCGGGCGGTT ATGCAGGAGC GCTTTCAACT CCACTATCAA
CCCAAGCTGG AGATTGCCAC CGGTGAGATT GAAGGGGTAG AGGCGTTGGT GCGGTGGCCC
CGCAGAGATG GCAGAATGTT CTCCCCCGAC GCCTTTATTC CCTTGGCCGA AGAGACGGGT
TTGATTGTAC CGTTGGGGCG TTGGATCCTT AAACAGGCGT GCGCCGACGT GGTAGCCATC
AATGCCCAGC GGGTCCGTCC CCTACGGGTG GCGGTGAACC TGTCGGCGAA ACAGTTTCAA
CAGGAGGATC TGGAGCAGAT GGTGTTGGAG GCTCTGGAGG AGACAGGGTT AGAGACCCAA
CTGCTGGAGT TGGAACTGAC CGAGAGTATG ATGATGGGGG ATGTGGATGA GGCGATCAAT
ACCATGAGCA TTTTAAAAGG CTTGGGTTTG ACGCTCTCCA TTGATGATTT TGGCACTGGT
TACTCTTCGC TCTCTTATCT GAAGCGTTTT CCTGTGGATG CCCTTAAGAT TGACCAATCT
TTTGTGCGGG ATTTAGAACG TGATTCGGAG GATGCCGCCA TCGTACACGC GGTGTGCAAC
CTGGGTGAGA GCTTGGGTAT GAAGGTGGTG GCCGAAGGGA TAGAGACCCA ATTGCAGATG
GATTTTCTGC GCCAGCTTAA TTGTGACACT GGCCAGGGTT ATTTTATTGC GCGCCCCATG
CCGCTGGCCC AGTTGCAGGA TTTTTTGGCG CAACATCAGG GTTGA
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| Protein sequence | MKSLTHKLVI FVSALVVVVV AISGWFAYEQ TRHLLLERAL PSLRAKVEAS MGDFLKPYAA
AHGPLQLLAT APSMQALLRA KLAMDVDQQK TQVLLRDVEN LLQNYIKFYP DTWQIRLEGV
ATNGAAWLIV VPAGAQPIAV VEDKLGQTNQ GGEPEASPLR AGEVRYSAIE SDISQGAEGK
PSQAGLSMTL RVDYAGQPAA RLVVYQKLTH SLEQLRGALA GAGQLYVVEP RHFRYVVHPD
RAKQLGQTLG TVWGLSEEFP LLAEGLAALQ SVQTGGRSLQ REDGEHLVHM AWYTVGQAGR
GADVGVIYRL PRQAVLGAFD ALVQRSLWIN LALVMVALLG SALFAGSVTR PLRHLAQVIS
GYGRGEHLPL QYTERSDEVG QIGETFLEMR QAIEARTQAL EEEEQRLNSL FESAVDGILI
IDAKGIIQRY NAGACKLFGY TSKEALGKNV SLLMQDVVGQ EHDLFITRFL QEGGTRVVGN
SREVEARHKD GSALPVQLSV SHFKYAGEDY FTGICHDLRH QHWLQSALKM ANDHLESQVA
ERTEDLTQAN QALQQEVAEH QLTQAKLFLV NQVFEKARQA IVITDHNNKI LDVNPAYEAL
TGFQKQQVVG HDPAVGKSGR HDPAFYARMW RSLLSENHWE GEVWDRRSDG SIYPKYLSID
RVLDRQGSVL NYVAMFQDLT EQKATEEELE RLSHYDPLTG LPNRALFRNR LEHEFLVARR
HNRSVALVLI NLDRFKQIND SFGFTVGDRL LAMVAKRLEQ LVRKTDLIAR QENRQERDSD
TLSRLGGDEF SIILAELRAA EDAAIVARRT VALLEEPYDI EGQEVFLGGS LGVSIYPENA
ESLNGMIQCA ERALVKAKEG GRNTFRFYSE EMNRHSAEQV RLETELRRAV MQERFQLHYQ
PKLEIATGEI EGVEALVRWP RRDGRMFSPD AFIPLAEETG LIVPLGRWIL KQACADVVAI
NAQRVRPLRV AVNLSAKQFQ QEDLEQMVLE ALEETGLETQ LLELELTESM MMGDVDEAIN
TMSILKGLGL TLSIDDFGTG YSSLSYLKRF PVDALKIDQS FVRDLERDSE DAAIVHAVCN
LGESLGMKVV AEGIETQLQM DFLRQLNCDT GQGYFIARPM PLAQLQDFLA QHQG
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