Gene Mmc1_2972 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_2972 
Symbol 
ID4483490 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp3688084 
End bp3691488 
Gene Length3405 bp 
Protein Length1134 aa 
Translation table11 
GC content54% 
IMG OID639723719 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_866869 
Protein GI117926252 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.56424 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGTT TAACCCATAA GCTGGTGATC TTTGTTAGCG CTCTGGTGGT GGTCGTGGTG 
GCCATTTCTG GCTGGTTTGC CTATGAGCAG ACCCGACATT TGCTACTAGA GCGCGCGCTC
CCGTCGCTGC GGGCAAAGGT TGAAGCATCC ATGGGCGATT TTTTAAAGCC CTATGCCGCC
GCTCATGGCC CGTTGCAACT GTTGGCGACA GCGCCTTCCA TGCAGGCGTT GCTGCGGGCA
AAACTGGCGA TGGATGTAGA CCAGCAAAAG ACTCAAGTTC TCCTGAGGGA TGTGGAGAAC
TTGTTGCAAA ACTATATAAA ATTTTACCCA GACACTTGGC AAATCCGTCT GGAAGGCGTC
GCCACAAACG GTGCGGCTTG GTTGATAGTG GTACCCGCTG GCGCGCAGCC AATCGCGGTG
GTAGAGGATA AACTGGGACA AACCAACCAG GGTGGTGAGC CTGAGGCGTC GCCCTTGCGC
GCGGGAGAGG TGCGCTATTC CGCCATTGAA AGCGATATCT CCCAGGGCGC TGAGGGAAAG
CCCTCTCAAG CAGGTCTAAG CATGACCCTG CGGGTGGATT ATGCGGGTCA GCCAGCAGCT
CGATTGGTTG TATATCAAAA ACTTACGCAT TCTTTGGAAC AGCTTCGCGG CGCTTTGGCG
GGTGCCGGTC AACTCTACGT GGTGGAGCCC CGTCATTTTA GGTATGTTGT CCATCCAGAT
CGGGCAAAAC AGCTTGGACA AACCCTCGGC ACGGTTTGGG GATTAAGCGA AGAGTTCCCT
CTGCTGGCCG AAGGCTTGGC CGCCTTACAA TCGGTGCAGA CTGGTGGCCG TTCGCTGCAA
CGGGAAGATG GGGAACACTT GGTGCATATG GCTTGGTACA CCGTGGGCCA AGCTGGCCGT
GGGGCGGATG TGGGGGTTAT TTATCGCCTA CCACGACAAG CGGTGCTGGG CGCTTTTGAT
GCGCTTGTCC AGCGTAGCTT GTGGATCAAC TTGGCGTTGG TGATGGTTGC GCTGTTGGGC
AGTGCCCTGT TTGCTGGTTC GGTAACAAGA CCATTGCGCC ATCTTGCGCA GGTAATCTCC
GGTTATGGTC GGGGAGAACA TCTACCGCTG CAATACACAG AGCGTAGTGA TGAGGTAGGG
CAAATCGGTG AGACCTTTTT GGAGATGCGA CAGGCCATTG AAGCCCGAAC CCAAGCTTTA
GAGGAAGAAG AACAACGGCT TAATTCACTG TTTGAAAGTG CCGTGGATGG CATTCTTATC
ATTGATGCGA AAGGTATAAT CCAACGCTAC AATGCCGGTG CGTGCAAGCT GTTTGGATAC
ACCTCTAAAG AAGCGCTGGG GAAAAATGTC TCCCTGTTGA TGCAGGATGT GGTGGGACAA
GAACATGATC TGTTCATTAC CCGCTTTTTG CAAGAGGGTG GCACGCGGGT GGTGGGCAAT
AGTCGTGAGG TGGAGGCGCG TCATAAAGAT GGTAGTGCGC TGCCGGTGCA GCTCTCGGTC
AGTCACTTTA AGTATGCCGG GGAGGACTAT TTTACCGGTA TATGCCACGA TCTGCGCCAC
CAGCATTGGT TGCAGAGTGC CTTGAAAATG GCCAACGATC ACTTAGAGAG CCAGGTTGCC
GAACGCACCG AGGATCTTAC CCAGGCCAAT CAGGCACTCC AGCAAGAGGT GGCGGAACAC
CAACTAACCC AGGCCAAGCT GTTTTTGGTG AATCAAGTTT TTGAAAAAGC ACGGCAGGCG
ATTGTTATTA CAGATCATAA TAATAAAATA TTGGATGTTA ATCCCGCCTA TGAGGCGTTG
ACAGGGTTTC AGAAACAGCA GGTCGTGGGT CATGATCCTG CGGTGGGTAA GTCGGGGCGG
CACGATCCTG CTTTTTACGC CCGCATGTGG CGCAGCTTGT TGTCAGAAAA TCATTGGGAA
GGTGAGGTGT GGGATCGCCG CTCCGATGGT TCGATCTATC CAAAATATTT AAGTATTGAC
CGTGTGTTGG ATCGTCAGGG TAGCGTGCTT AACTATGTGG CCATGTTCCA GGATTTAACC
GAGCAAAAAG CCACGGAGGA GGAGTTGGAG CGGCTCTCCC ACTACGATCC GTTGACGGGC
CTGCCCAACC GGGCGCTCTT TCGCAATCGT CTCGAACATG AGTTTTTGGT GGCACGGCGG
CATAATCGCA GTGTGGCGCT GGTTTTGATT AATCTGGATC GCTTTAAACA GATTAATGAC
TCCTTTGGCT TTACGGTGGG GGATCGGTTG CTGGCGATGG TGGCCAAGCG GCTGGAGCAA
CTGGTACGCA AAACCGATCT GATCGCCCGC CAAGAGAACC GTCAGGAGCG TGATTCGGAT
ACCCTCTCTC GCTTGGGGGG GGATGAGTTT TCCATTATTT TGGCCGAGTT GCGGGCGGCG
GAAGACGCCG CCATCGTGGC CCGGCGTACG GTGGCGTTAT TAGAAGAACC CTATGACATC
GAGGGGCAGG AGGTGTTTTT GGGCGGTAGC TTGGGGGTCT CTATCTACCC AGAAAATGCC
GAGAGTCTAA ATGGTATGAT CCAGTGTGCC GAACGCGCCT TGGTTAAAGC CAAGGAGGGC
GGGCGCAACA CCTTCCGCTT TTATTCAGAG GAGATGAACC GCCACAGTGC TGAGCAGGTG
CGGTTGGAAA CGGAGCTGCG CCGGGCGGTT ATGCAGGAGC GCTTTCAACT CCACTATCAA
CCCAAGCTGG AGATTGCCAC CGGTGAGATT GAAGGGGTAG AGGCGTTGGT GCGGTGGCCC
CGCAGAGATG GCAGAATGTT CTCCCCCGAC GCCTTTATTC CCTTGGCCGA AGAGACGGGT
TTGATTGTAC CGTTGGGGCG TTGGATCCTT AAACAGGCGT GCGCCGACGT GGTAGCCATC
AATGCCCAGC GGGTCCGTCC CCTACGGGTG GCGGTGAACC TGTCGGCGAA ACAGTTTCAA
CAGGAGGATC TGGAGCAGAT GGTGTTGGAG GCTCTGGAGG AGACAGGGTT AGAGACCCAA
CTGCTGGAGT TGGAACTGAC CGAGAGTATG ATGATGGGGG ATGTGGATGA GGCGATCAAT
ACCATGAGCA TTTTAAAAGG CTTGGGTTTG ACGCTCTCCA TTGATGATTT TGGCACTGGT
TACTCTTCGC TCTCTTATCT GAAGCGTTTT CCTGTGGATG CCCTTAAGAT TGACCAATCT
TTTGTGCGGG ATTTAGAACG TGATTCGGAG GATGCCGCCA TCGTACACGC GGTGTGCAAC
CTGGGTGAGA GCTTGGGTAT GAAGGTGGTG GCCGAAGGGA TAGAGACCCA ATTGCAGATG
GATTTTCTGC GCCAGCTTAA TTGTGACACT GGCCAGGGTT ATTTTATTGC GCGCCCCATG
CCGCTGGCCC AGTTGCAGGA TTTTTTGGCG CAACATCAGG GTTGA
 
Protein sequence
MKSLTHKLVI FVSALVVVVV AISGWFAYEQ TRHLLLERAL PSLRAKVEAS MGDFLKPYAA 
AHGPLQLLAT APSMQALLRA KLAMDVDQQK TQVLLRDVEN LLQNYIKFYP DTWQIRLEGV
ATNGAAWLIV VPAGAQPIAV VEDKLGQTNQ GGEPEASPLR AGEVRYSAIE SDISQGAEGK
PSQAGLSMTL RVDYAGQPAA RLVVYQKLTH SLEQLRGALA GAGQLYVVEP RHFRYVVHPD
RAKQLGQTLG TVWGLSEEFP LLAEGLAALQ SVQTGGRSLQ REDGEHLVHM AWYTVGQAGR
GADVGVIYRL PRQAVLGAFD ALVQRSLWIN LALVMVALLG SALFAGSVTR PLRHLAQVIS
GYGRGEHLPL QYTERSDEVG QIGETFLEMR QAIEARTQAL EEEEQRLNSL FESAVDGILI
IDAKGIIQRY NAGACKLFGY TSKEALGKNV SLLMQDVVGQ EHDLFITRFL QEGGTRVVGN
SREVEARHKD GSALPVQLSV SHFKYAGEDY FTGICHDLRH QHWLQSALKM ANDHLESQVA
ERTEDLTQAN QALQQEVAEH QLTQAKLFLV NQVFEKARQA IVITDHNNKI LDVNPAYEAL
TGFQKQQVVG HDPAVGKSGR HDPAFYARMW RSLLSENHWE GEVWDRRSDG SIYPKYLSID
RVLDRQGSVL NYVAMFQDLT EQKATEEELE RLSHYDPLTG LPNRALFRNR LEHEFLVARR
HNRSVALVLI NLDRFKQIND SFGFTVGDRL LAMVAKRLEQ LVRKTDLIAR QENRQERDSD
TLSRLGGDEF SIILAELRAA EDAAIVARRT VALLEEPYDI EGQEVFLGGS LGVSIYPENA
ESLNGMIQCA ERALVKAKEG GRNTFRFYSE EMNRHSAEQV RLETELRRAV MQERFQLHYQ
PKLEIATGEI EGVEALVRWP RRDGRMFSPD AFIPLAEETG LIVPLGRWIL KQACADVVAI
NAQRVRPLRV AVNLSAKQFQ QEDLEQMVLE ALEETGLETQ LLELELTESM MMGDVDEAIN
TMSILKGLGL TLSIDDFGTG YSSLSYLKRF PVDALKIDQS FVRDLERDSE DAAIVHAVCN
LGESLGMKVV AEGIETQLQM DFLRQLNCDT GQGYFIARPM PLAQLQDFLA QHQG