Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_2968 |
Symbol | |
ID | 4483486 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 3684179 |
End bp | 3684853 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639723715 |
Product | ribosomal large subunit pseudouridine synthase A |
Protein accession | YP_866865 |
Protein GI | 117926248 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.577134 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCTTAC TCGACGCAGG CGATCCAACG CGGCATATCC TACACATGGA TGCCGATCTG CTTATCTTCA ACAAACCCAA CCGCATGCCC ATCTATCGCG GACCGGGTGG GGGCGAGACC CTGGCGGACC ATCTGCCCCA GCTCTGTTTT GAGCGCGGCA AGCCTCCCGC CGCCGTGCAT CGTCTGGATA GCGCCACCAG CGGCTGCTTG GTACTGGGAC GCCACAAGGG CATGCGTCGC AGCCTCAGCA ACCTGTTTGC CCAGGGTGGT GTTGAAAAGC TCTATTGGGC AGTGGTACAG GGACGCCCCC TCATGGATCA AGGGCTTATT GAGCTACCCT TACAGGATGT GGGCTGGCCG GGACGCCCAC GGGTCAAGGT TAGGATGGGG GGCAAATGGG GCCGCACACT GTTCCAGGTC ATGGGTTATG GGCAAAATGA GACGCTGCTG GCGCTGATGC CCCAAACGGG TCGCACCCAC CAACTGCGGG TTCATTGTGC CGCCATGGGC TGCCCCATTG TGGGAGACCC CCTCTATGGT GGCGCGGCCT GCGATGGCCC CCCCATGCAT CTCCATGCTC GGCGCATTCT CTTGCACGGT GCCATCCAAC AGAGTTTTAC CGCACCGGCG CCGCCCCATC TACAGCGCTT TCTGGAGCAG ATGCGCCCTT TCTAA
|
Protein sequence | MSLLDAGDPT RHILHMDADL LIFNKPNRMP IYRGPGGGET LADHLPQLCF ERGKPPAAVH RLDSATSGCL VLGRHKGMRR SLSNLFAQGG VEKLYWAVVQ GRPLMDQGLI ELPLQDVGWP GRPRVKVRMG GKWGRTLFQV MGYGQNETLL ALMPQTGRTH QLRVHCAAMG CPIVGDPLYG GAACDGPPMH LHARRILLHG AIQQSFTAPA PPHLQRFLEQ MRPF
|
| |