Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_2965 |
Symbol | |
ID | 4483483 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 3679895 |
End bp | 3681574 |
Gene Length | 1680 bp |
Protein Length | 559 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639723712 |
Product | 2-isopropylmalate synthase |
Protein accession | YP_866862 |
Protein GI | 117926245 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0782206 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.643957 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGGTT CGATGCCCTT TCATAAATAT AGCCCCTACC CCCCTGTAGC CCTTGCCAAT CGGCAGTGGC CCAACCGCAC CCTCACCAAA GCGCCGCTTT GGTGCAGTGT CGATCTGCGC GATGGCAACC AAGCCTTGGC GAACCCCATG GGACCTCAAG CCAAACGGCG CATGTTTGAC CTGTTGGTCG AGATTGGCTT TAAAGAGATT GAGGTGGGGT TTCCCTCGGC CTCGCGGGAT GATTTTCAAT TTTTGCGGGA TCTCATTGAG CAGAAGGCCA TCCCCGACGA TGTGACCGTG CAGATGTTGG TGCAGTCCCG CGCCCACTTA ATTGAGCGCA CCTTTGAAGC CTTACAAGGG GCCAAGCGGG CCATTGTGCA TCTTTACACC CCCACCTCTA GCTTGCAGCG GCGGGTGGTG TTTGGCAAAA GCCAACAAGA GATCATTGAT GTCGCCGTTG AAGGCACCCA GATGATCAAG GAGCATGCCC AGCGCTCTCC CGAGACCGAA ATCGTGTTGG AGTTCTCGCC CGAGAGCTTT ACCGGCACCG AATTACCGTT TGCGTTGGCC ATCAGCGAAG CGGTGCAGCA GGTGTGGCAA CCCACCCCTG CCCAACCCAT GATCCTTAAT TTGCCCGCGA CCGTGGAGAT GTCCACCCCC AATATCTACG CCGACCAGAT TGAGTGGATG CTCAGCCACC TTAGCGACCC CCAGAGCATC ATTATCAGCC TGCATGCCCA CAATGATCGG GGTACTGCGG TGGCCGCCAC CGAGTTGGCC ATGTTGGCCG GTGCGGGCCG GGTGGAGGGA ACCTTGTTTG GCAATGGCGA GCGCACCGGT AATACCGATG TGGTGGCGGT GGCGATGAAT TTGCACAGCC AGGGCATTGA TGCTGGGCTT AATTTTTCGG AGATGCCCCG TATTATTGCC ACCAGCGAAG CCTGCACCGG CATGAGCGTC CCGCCCCGGC AGCCCTATGC GGGAGAGCTG GTCTTTACCG CTTTTTCGGG CAGCCATCAG GATGCCATTC GCAAGGGATT ACATCTCCAC AAGCAGGAGC AGGCGCAGCA GTGGGCGGTA CCCTATCTGC CCATTGATCC CCAGGATCTT GGCCGCCACT ATGAACCGGT TATTCGCATC AATAGCCAGT CGGGCAAGGG CGGCATGGCC TTTATTATGG AGGAGCGTTG CGGCATCCAC ATGCCCAAAG CCATGCAGGT GGAGTTTAGC CGGGTCATCC AGGCTGTCAC CGATGAGATG GGCCGGGAGC TACAGGCCGA TGAAATTGAA CAGCTCTTTT TCAAAAACTT TGTCTTGCAG GAAAACCCCT TGAGTCTGGG TCATGTTGAG CATCGAGAGG AGACCGAGGA GCGCCATCAT CTGCACGCCC AGGTCAGTTA TGCAGGCACC GTGCAGGCGT TGCAAGCCCA TGGCAATGGC CCCATGAGCG CCTTGGTCAA TGCGTTGGAG ACCTTTTATA GCATGACCAT CCAGATCCAT GACTACCACC AGCACGCCCG CACCGCCGGA CGGGACTCGG AGGCGGTTAG TTTTGTGCAA ATCAGCGTAA ATGGTGGCAA GCCGACCTTT GGGGTAGGCT TGCACACCGA CAGCAGCCGC TCTGCGTTGG AGGCCGTGCT CTGTAGCATT AACCGAGCTT TAGCCACATC TTTAACCTAA
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Protein sequence | MNGSMPFHKY SPYPPVALAN RQWPNRTLTK APLWCSVDLR DGNQALANPM GPQAKRRMFD LLVEIGFKEI EVGFPSASRD DFQFLRDLIE QKAIPDDVTV QMLVQSRAHL IERTFEALQG AKRAIVHLYT PTSSLQRRVV FGKSQQEIID VAVEGTQMIK EHAQRSPETE IVLEFSPESF TGTELPFALA ISEAVQQVWQ PTPAQPMILN LPATVEMSTP NIYADQIEWM LSHLSDPQSI IISLHAHNDR GTAVAATELA MLAGAGRVEG TLFGNGERTG NTDVVAVAMN LHSQGIDAGL NFSEMPRIIA TSEACTGMSV PPRQPYAGEL VFTAFSGSHQ DAIRKGLHLH KQEQAQQWAV PYLPIDPQDL GRHYEPVIRI NSQSGKGGMA FIMEERCGIH MPKAMQVEFS RVIQAVTDEM GRELQADEIE QLFFKNFVLQ ENPLSLGHVE HREETEERHH LHAQVSYAGT VQALQAHGNG PMSALVNALE TFYSMTIQIH DYHQHARTAG RDSEAVSFVQ ISVNGGKPTF GVGLHTDSSR SALEAVLCSI NRALATSLT
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