Gene Mmc1_2965 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_2965 
Symbol 
ID4483483 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp3679895 
End bp3681574 
Gene Length1680 bp 
Protein Length559 aa 
Translation table11 
GC content57% 
IMG OID639723712 
Product2-isopropylmalate synthase 
Protein accessionYP_866862 
Protein GI117926245 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0119] Isopropylmalate/homocitrate/citramalate synthases 
TIGRFAM ID[TIGR00970] 2-isopropylmalate synthase, yeast type 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0782206 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.643957 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGGTT CGATGCCCTT TCATAAATAT AGCCCCTACC CCCCTGTAGC CCTTGCCAAT 
CGGCAGTGGC CCAACCGCAC CCTCACCAAA GCGCCGCTTT GGTGCAGTGT CGATCTGCGC
GATGGCAACC AAGCCTTGGC GAACCCCATG GGACCTCAAG CCAAACGGCG CATGTTTGAC
CTGTTGGTCG AGATTGGCTT TAAAGAGATT GAGGTGGGGT TTCCCTCGGC CTCGCGGGAT
GATTTTCAAT TTTTGCGGGA TCTCATTGAG CAGAAGGCCA TCCCCGACGA TGTGACCGTG
CAGATGTTGG TGCAGTCCCG CGCCCACTTA ATTGAGCGCA CCTTTGAAGC CTTACAAGGG
GCCAAGCGGG CCATTGTGCA TCTTTACACC CCCACCTCTA GCTTGCAGCG GCGGGTGGTG
TTTGGCAAAA GCCAACAAGA GATCATTGAT GTCGCCGTTG AAGGCACCCA GATGATCAAG
GAGCATGCCC AGCGCTCTCC CGAGACCGAA ATCGTGTTGG AGTTCTCGCC CGAGAGCTTT
ACCGGCACCG AATTACCGTT TGCGTTGGCC ATCAGCGAAG CGGTGCAGCA GGTGTGGCAA
CCCACCCCTG CCCAACCCAT GATCCTTAAT TTGCCCGCGA CCGTGGAGAT GTCCACCCCC
AATATCTACG CCGACCAGAT TGAGTGGATG CTCAGCCACC TTAGCGACCC CCAGAGCATC
ATTATCAGCC TGCATGCCCA CAATGATCGG GGTACTGCGG TGGCCGCCAC CGAGTTGGCC
ATGTTGGCCG GTGCGGGCCG GGTGGAGGGA ACCTTGTTTG GCAATGGCGA GCGCACCGGT
AATACCGATG TGGTGGCGGT GGCGATGAAT TTGCACAGCC AGGGCATTGA TGCTGGGCTT
AATTTTTCGG AGATGCCCCG TATTATTGCC ACCAGCGAAG CCTGCACCGG CATGAGCGTC
CCGCCCCGGC AGCCCTATGC GGGAGAGCTG GTCTTTACCG CTTTTTCGGG CAGCCATCAG
GATGCCATTC GCAAGGGATT ACATCTCCAC AAGCAGGAGC AGGCGCAGCA GTGGGCGGTA
CCCTATCTGC CCATTGATCC CCAGGATCTT GGCCGCCACT ATGAACCGGT TATTCGCATC
AATAGCCAGT CGGGCAAGGG CGGCATGGCC TTTATTATGG AGGAGCGTTG CGGCATCCAC
ATGCCCAAAG CCATGCAGGT GGAGTTTAGC CGGGTCATCC AGGCTGTCAC CGATGAGATG
GGCCGGGAGC TACAGGCCGA TGAAATTGAA CAGCTCTTTT TCAAAAACTT TGTCTTGCAG
GAAAACCCCT TGAGTCTGGG TCATGTTGAG CATCGAGAGG AGACCGAGGA GCGCCATCAT
CTGCACGCCC AGGTCAGTTA TGCAGGCACC GTGCAGGCGT TGCAAGCCCA TGGCAATGGC
CCCATGAGCG CCTTGGTCAA TGCGTTGGAG ACCTTTTATA GCATGACCAT CCAGATCCAT
GACTACCACC AGCACGCCCG CACCGCCGGA CGGGACTCGG AGGCGGTTAG TTTTGTGCAA
ATCAGCGTAA ATGGTGGCAA GCCGACCTTT GGGGTAGGCT TGCACACCGA CAGCAGCCGC
TCTGCGTTGG AGGCCGTGCT CTGTAGCATT AACCGAGCTT TAGCCACATC TTTAACCTAA
 
Protein sequence
MNGSMPFHKY SPYPPVALAN RQWPNRTLTK APLWCSVDLR DGNQALANPM GPQAKRRMFD 
LLVEIGFKEI EVGFPSASRD DFQFLRDLIE QKAIPDDVTV QMLVQSRAHL IERTFEALQG
AKRAIVHLYT PTSSLQRRVV FGKSQQEIID VAVEGTQMIK EHAQRSPETE IVLEFSPESF
TGTELPFALA ISEAVQQVWQ PTPAQPMILN LPATVEMSTP NIYADQIEWM LSHLSDPQSI
IISLHAHNDR GTAVAATELA MLAGAGRVEG TLFGNGERTG NTDVVAVAMN LHSQGIDAGL
NFSEMPRIIA TSEACTGMSV PPRQPYAGEL VFTAFSGSHQ DAIRKGLHLH KQEQAQQWAV
PYLPIDPQDL GRHYEPVIRI NSQSGKGGMA FIMEERCGIH MPKAMQVEFS RVIQAVTDEM
GRELQADEIE QLFFKNFVLQ ENPLSLGHVE HREETEERHH LHAQVSYAGT VQALQAHGNG
PMSALVNALE TFYSMTIQIH DYHQHARTAG RDSEAVSFVQ ISVNGGKPTF GVGLHTDSSR
SALEAVLCSI NRALATSLT