| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2818 |
|---|
| Symbol | |
|---|
| ID | 4481434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 3528504 |
|---|
| End bp | 3529988 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639723563 |
|---|
| Product | lambda family phage portal protein |
|---|
| Protein accession | YP_866717 |
|---|
| Protein GI | 117926100 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5511] Bacteriophage capsid protein |
|---|
| TIGRFAM ID | [TIGR01539] phage portal protein, lambda family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTGT TTAAGCGCCT GTTTGGTGGT CCTCCCAAAC GCCGGGCAGG ATATGAAGGG
GCCGCATCTG GTCGGCGGCT GGGCAATTGG CAACCGGAAG AGGCCGGGAT CAATGCCCTG
CTGTTTCGCG ATGTCACCCT TATGCGTGCA CGCTCACGAG ACTTGGTGCG CCGTAATGCC
TGGGCATCCA ACGCTGTAGA CTCTCTGGTT GGGAGCCTTG TGGGTACCGG CATCAAGCCT
CAATCCACGG TGAAAGACCC CCAGATCAAA GCCCAGATTC AGTCTCTATG GCTGGCCTGG
ACAAAAGAGG CCGATGCCCA CGGCATGTTG GGCTTCTATG GCCTTCAGGC TTTGATTGCC
CGCGCTATGA TCGAGGGGGG CGAGGTGCTG GTACGGCTGC GCAATCGGGA TGCCCGTGAT
GGCTTGTTAG TCCCCCTTCA ACTCCAGGTG TTGGAGCCCG AACATCTCCC TGCCAGTGAC
AGCCGGGATC TGCCCAATGG CCACCGAGTC AGGGCTGGGA TTGAGTTCGA CAAAATAGGT
CGCCGTGTCG CTTACCATCT GTTTAGGGAA CACCCCGGTG AACAGCCCAT GCTGTTCAAA
GCGGGGGATA TGGTCCGGGT GCCAGGCTCA GAAGTGTGCC ACATCTTTAA ACCGCTACGC
CCTGGTCAGC TTCGGGGTGA ACCCTGGATG GCTCAGGCGC TGGTGCGACT CCACGAACTG
GATCAGTACG ATGATGCGGA GTTGGTACGC AAAAAGACCG CCGCGCTCAT CGCCGGCTTC
ATCACCAAAC CTGACCCCGA GTTGGGCGTC GGCGGTGAGG ACGGTCAGGA TCCCGATGAG
AACGGATCTG TCCCGGTCAC CTGGGCTCCC GGCACCATGC AGGTACTCTT ACCCGGTGAG
GATGTGAAGT TCTCAGACCC TGCCGACGTG GGCGGTCAAT ACGGGGAGTT CATGCGCACC
CAACTCCGCG CTGTGGCGGT GGGCTTGGGA TTGACCTATG AACAACTCAC CGGCGACCTC
ACTGGGGTGA ACTACTCCTC CATCCGTGCT GGCATGGTGG AGTTTCGCCG TCGTATGGAA
CAGATCCAGC GCATGGTCTT GATCCATCAG CTTTGCCGCC CTGTATGGGA ACGGTGGATG
GATCAGGCTG TTTTGTCGGG TGCTTTGCAG CTTCCCGAGT ACAGCAAACG CCGCCGTGAA
TATCTGGCGG TGAAGTGGAT ACCCCAAGGG TGGACCTGGG TGGATCCACA AAAAGAGATG
AACTCCATCA TCTGGGCGAT CCGGGCTGGT CTGCTCAGTC GGGCTGAAGC AGTCTCTACC
TACGGCTATG ACATCGAAGA GATCGACCGG GAGATCGTAG CCGATAACAA GCGTGCCGAT
GAACTGGGGC TGGTGTTTGA CTCTGACTCA CGGCGTACTT CCCGGTCGGG AGTATCACGG
GACAGCAAGC AGAGTGATAA GGAGTTGGTA GATCTTACCG AATAA
|
|---|
| Protein sequence | MKLFKRLFGG PPKRRAGYEG AASGRRLGNW QPEEAGINAL LFRDVTLMRA RSRDLVRRNA
WASNAVDSLV GSLVGTGIKP QSTVKDPQIK AQIQSLWLAW TKEADAHGML GFYGLQALIA
RAMIEGGEVL VRLRNRDARD GLLVPLQLQV LEPEHLPASD SRDLPNGHRV RAGIEFDKIG
RRVAYHLFRE HPGEQPMLFK AGDMVRVPGS EVCHIFKPLR PGQLRGEPWM AQALVRLHEL
DQYDDAELVR KKTAALIAGF ITKPDPELGV GGEDGQDPDE NGSVPVTWAP GTMQVLLPGE
DVKFSDPADV GGQYGEFMRT QLRAVAVGLG LTYEQLTGDL TGVNYSSIRA GMVEFRRRME
QIQRMVLIHQ LCRPVWERWM DQAVLSGALQ LPEYSKRRRE YLAVKWIPQG WTWVDPQKEM
NSIIWAIRAG LLSRAEAVST YGYDIEEIDR EIVADNKRAD ELGLVFDSDS RRTSRSGVSR
DSKQSDKELV DLTE
|
|---|
| |