| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2641 |
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| Symbol | |
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| ID | 4480787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 3339175 |
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| End bp | 3342531 |
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| Gene Length | 3357 bp |
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| Protein Length | 1118 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 639723385 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_866543 |
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| Protein GI | 117925926 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.604832 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCCCCC TCCCAATTGC ATCTCATATG GAGGCTCCCG TGGAAGAGAC AATACGCATC
GGATTGATGA CTCCCCTGAC AGGCTTGGTA AAGCTGTATG GCCCCGAGAT CTCATGGGCA
GGGCAAATTG CTTGTGATGA GATCAATGAG TCTGGGGGTG TGCTAGGCAA GTCTCTGGAG
CTTGTGATTG TGGATGATGG ATCACTGCCT GAGACTGCTG TTCCTGCAGC AAAAGAACTG
GTCGATGAAC ATCGTTGTGT TGCGATGATT GGCAACCTGC TCTCAAACTC ACGAATTGCC
GTAGCTAATA TGGTCGCCGA GCCAAGGCGC ATTCCTCATC TGAATTTTTC CTTTTATGAA
GGCAGCATTT TTAACCCCTT CTTTTTCCAT TTTGCAGCTC TTCCCAACCA ACAAATTAAA
AAAATGATCC CGTTTATGGC CAATCGCTAT GGGGTCAAAA TGTTTTTCGC TGGGAATAAT
TACGAGTGGC CACGCGGATC CATTGATGCA TGTAAACAAT CATTGGAAAA GGTGGGGGGA
GAGTGTGTCG GAGAGGAATA CCTCTCCATA GGGGCCAGCG CAGAAGAGAT TGAAAACCTG
CTATCCAAAG TAGCCCGATC AGGAGCAGAT GTTTTTGTTC CCTATTTTGC AGGAGAGGAC
CAGATCAACC TGCTTAATCG CTTTACTGAA CTCGGGCTGA AGAAACGCAT GGCTGTTGTA
ATGGGGCACT TTGATGAGGC CATGGCTTCA CATCTTGCCC CTGAGGTCAG AGAAGGTTTC
TATTCCAGCA ATACATACTT CATGTCAGTG CAGACTGATC TTTCCAAGGC TTACTCAGAG
CGTTTGATTA AGCTGGACCA GGTGAAAGGT ATTCATCCGG ATGGGAATGG CCACATCACA
AATTTTGGTG AAGGCACATA TCTGTGTGTA AAAGCTTTTG CAGAAGCAGC TAAAGTTGCT
GGAAGTTTGC AACCAGAAGA TCTCATCCAT GCCCTTGAGC ATGTCCAGAT AGAAAGTTTG
CAGGGCTCTG TCCGTATGGA TGCCAAAACC CACCATGCTC ACATCAACAG CTATCTATCC
TGCTGCAATA GTGACGGGAC ATTCTCGATT GTTGAAGAGT TTGGACAAAT CCCACCTGAG
ATTCCTTCCC GTTATCAAGA GCTTTTTGGT GTTTCCTGTT TGAATGAGTC TGGCACTTGC
CCCCACGCTA CATCACTTAT AGCGAAAGAA GTTGTTGAAG CTCATCAATC TGAAGGTAAT
GCAAGGCAGG TGCTTTCTCT TGCTGACATG GCCATCATTT CAGTAAATGA AGAGGGGATT
ATTATTGAAG TAAACCGCTT TGCCTCTGAA ATGTTCGGTT ATTCTGAACA AGAAATGATC
GGCCTTTCTG TCCACTTGCT TTTACCTCCG CATTTCCGAA AACGCCACAC CTTACTATAT
CAAGGATTTG TAGATGGTGA AGTGACAGAG CGCAGAATGG GGCAAAGAGG TGAGGTCACA
GGGTATCGTA AAGATGGTAC CTTCTTCCCT GTTGAAGCCT CTATTGCAAA GTATAGATGC
AATGAAAAAT GGGTGATGGT TGCGTCATTT AGGGAGTTGA CTGAACTTAA ACGAGCACAA
GAAGAGCTTG TTCGTCGTGC CACCCATGAT CCTCTAACGG GCCTGCCAAA TCGTACTCTA
TTCAGAGAGC GTCTAACGAG TGCTCTCCAT AGGTCACATC AAAATGGTGA GAACATTGGT
CTTCTTTTTA TCAACCTGGA TGGCTTCAGA GAGATTAACG ACTCTTATGG GCATGAGATG
GGAGATCTCC TTTTAGAAGA GGTTTCTCAA AGGTTGATCA CAGTGGTGAA CCAGGGAGAC
ACGGTTGGTC GGTTAGCAGG GGATGAGTTT ATCATTTTAT GTGAACACAT ACAGAATCCG
GAGCCTCTCT CATCTTTGGC TGTATCAGTC ACCAATGTGA TCCGTGAGCC TATTGTCCAT
GATGATTTGA AACTGCGTGT GACCGCAAGT ATAGGCATCG CCCTTGGGCA TGGCTCAACA
CATAGTGCAG ATGATTTGAT GCGCTCTGCT GACTCCGCCA TGAACAGTGT TAAGGAGCGA
GGTCGCAATG GGTGGGAGTT TTTCAATCCA ACGCTGCAAG AAGAGGCTGA AAAGCGGCTC
GCAATCTCAA CAGGTCTTCG CACAGCCATT GATAACAACG AGTTTTACGC TCGTTACCAA
CCTATTGTGG ATTCTGAGTC CGGAATGATT CGTGGTGCTG AACTCTTGGT GCGATGGCGT
TCATCGGATG GTGAAATCTC GCCAGGCGTC TTTATCCCCG TTGCCGAGAT GACAGGTGCT
ATCATCACCA TCGGGAGGTG GGTTTTTGAA GAAGGGTGTA AAGCAGAGAG AAGATGGAAA
GCCAAATTTG GGGAGCAAGC CCCATATATC ACGATAAACG TCTCCACACG CCAGCTATCA
GAGCCACTTA TTATTGAAGA GTTCCAGGAA ATTCTGGCTG AAACCGGTGC AGATCCAACA
CGTATCATTT TAGAGATCAC TGAAACATCA TTGATGGCAG ATGTTTCAGC AAACAGGGAA
GTGTTAAACA GGTTGGCTAC AACTGGAATG AGAGTAGCTG TGGACGATTT TGGTACGGGC
TACTCATCCC TTGCACAGCT TTCACGCCTT AAGGTCAATA CGCTGAAAAT TGATCGTGAG
TTTGTGCTGG GATTAGATGA GGGAGAAGAG GGACAGATTG TTGTCTCTGC CATTAGCAGG
CTGGCTAAAT CACTTAAACT CAAGATTGTT GCAGAAGGTG TTGAAACGGA TGAGCAAAGG
AACACTATCC GTTCAATCGG ATGCGATCTG ATCCAAGGCT ACTATTACCA CCCGCCATTA
TCAGAAGAAG CACTTTTTGA AGCTGTTAGC ACTAGCTTGA GTCAAAGAAC CCACAATGAA
CAGCCTTTGA AGTTCTTGAT TTATATTAGT CGCCCTAAGT TTGAGATAAC TGAGGAAGGC
CTGCAGGCAA TTTTGAAGCA ATCAAGAGAA TTCAACCTGA AAAGTGGAAT CACAGGCTAT
CTTTTCTATC TGAAAGGTGC GTTTGCGCAA TACCTGGAAG GGGATGAAGA GCCTTTGAGC
CAACTTTATC AATCAATTCA AAAAGACAAT AGGCACAGTG ATTTAAAGAT CATTGCAGAG
GGAGATCTCC CAACCAGACT CTTTGCTGGC TGGGAAATGG GATACAAACA ACTAGACGGT
GTATTGCTTT CTGATAGAGC CAATCTTAGT CAGAACGAAT CGGATAATTA TGAGTGGCTG
AGCAGGCACC CAGAGCTGTG CTGTAAAATC TTTGAAACCA TCAGTCTGGA CTCATAG
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| Protein sequence | MCPLPIASHM EAPVEETIRI GLMTPLTGLV KLYGPEISWA GQIACDEINE SGGVLGKSLE
LVIVDDGSLP ETAVPAAKEL VDEHRCVAMI GNLLSNSRIA VANMVAEPRR IPHLNFSFYE
GSIFNPFFFH FAALPNQQIK KMIPFMANRY GVKMFFAGNN YEWPRGSIDA CKQSLEKVGG
ECVGEEYLSI GASAEEIENL LSKVARSGAD VFVPYFAGED QINLLNRFTE LGLKKRMAVV
MGHFDEAMAS HLAPEVREGF YSSNTYFMSV QTDLSKAYSE RLIKLDQVKG IHPDGNGHIT
NFGEGTYLCV KAFAEAAKVA GSLQPEDLIH ALEHVQIESL QGSVRMDAKT HHAHINSYLS
CCNSDGTFSI VEEFGQIPPE IPSRYQELFG VSCLNESGTC PHATSLIAKE VVEAHQSEGN
ARQVLSLADM AIISVNEEGI IIEVNRFASE MFGYSEQEMI GLSVHLLLPP HFRKRHTLLY
QGFVDGEVTE RRMGQRGEVT GYRKDGTFFP VEASIAKYRC NEKWVMVASF RELTELKRAQ
EELVRRATHD PLTGLPNRTL FRERLTSALH RSHQNGENIG LLFINLDGFR EINDSYGHEM
GDLLLEEVSQ RLITVVNQGD TVGRLAGDEF IILCEHIQNP EPLSSLAVSV TNVIREPIVH
DDLKLRVTAS IGIALGHGST HSADDLMRSA DSAMNSVKER GRNGWEFFNP TLQEEAEKRL
AISTGLRTAI DNNEFYARYQ PIVDSESGMI RGAELLVRWR SSDGEISPGV FIPVAEMTGA
IITIGRWVFE EGCKAERRWK AKFGEQAPYI TINVSTRQLS EPLIIEEFQE ILAETGADPT
RIILEITETS LMADVSANRE VLNRLATTGM RVAVDDFGTG YSSLAQLSRL KVNTLKIDRE
FVLGLDEGEE GQIVVSAISR LAKSLKLKIV AEGVETDEQR NTIRSIGCDL IQGYYYHPPL
SEEALFEAVS TSLSQRTHNE QPLKFLIYIS RPKFEITEEG LQAILKQSRE FNLKSGITGY
LFYLKGAFAQ YLEGDEEPLS QLYQSIQKDN RHSDLKIIAE GDLPTRLFAG WEMGYKQLDG
VLLSDRANLS QNESDNYEWL SRHPELCCKI FETISLDS
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