| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2576 |
|---|
| Symbol | |
|---|
| ID | 4483549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 3279623 |
|---|
| End bp | 3281107 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639723323 |
|---|
| Product | lambda family phage portal protein |
|---|
| Protein accession | YP_866481 |
|---|
| Protein GI | 117925864 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5511] Bacteriophage capsid protein |
|---|
| TIGRFAM ID | [TIGR01539] phage portal protein, lambda family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.189282 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTGT TTAAGCGTCT GTTTGGTGGT CCTCCCAAAC GCCGGGCAGG ATATGAAGGG
GCCGCATCTG GTCGGCGGCT GGGTAACTGG CAGCCGGAAG AGGCCGGGAT CAATGCCCTG
CTGTTTCGCG ATGCCACCCT CATGCGTGCA CGCTCACGAG ACTTGGTGCG CCGTAATGCC
TGGGCATCCA ACGCTGTAGA CTCTCTGGTT GGGAACCTTG TGGGTACCGG TATCAAGCCC
CAATCCACGG TAAAAGACCC CCAGATCAAA GCCCAGATTC AGTCTTTATG GCTGGCCTGG
ACAAAAGAGG CCGATGCCCA CGGCATGCTG GGCTTCTATG GCCTTCAGGC TTTGATTGCC
CGCGCTATGA TCGAGGGGGG CGAGGTGCTG GTACGGCTGC GCAATCGGGA TGCCCGTGAT
GGCTTGTTAG TCCCCCTTCA ACTCCAGGTA TTGGAGCCCG AACATCTCCC TGCCAGTGAC
AGCCGGGATC TACCCAACGG GCATCGGGTA AGGGCTGGGA TTGAGTTTGA CAAGATCGGT
CGCCGGGTCG CCTACCATCT GTTTCGGGAA CACCCCGGTG AACAGCCCAT GCTGTTCAAA
GCGGGGGATG TAGTCCGGGT GCCAGGCTCA GAAGTGTGTC ACATTTTCAA ACCTCTGCGC
CCCGGTCAGC TAAGAGGAGA ACCCTGGATG GCTCAGGCGT TGGTCCGCCT CCATGAGTTG
GATCAGTACG ACGATGCGGA GCTGGTGCGG AAAAAGACCG CCGCGCTCAT CGCCGGCTTC
ATCACCAAAC CTGACCCCGA GTTGGGCGTT GGCGGTGAGG ATGGACAGGA CCCGGATGAA
CAGGGGGCCG TCCCCGTCAC CTGGGCTCCC GGCACCATGC AGGTCCTGCT ACCCGGTGAG
GATGTAAAGT TTTCCGATCC GGCAGACGTG GGCGGTCAAT ACGGGGAGTT CATGCGCACC
CAACTCCGCG CTGTGGCTGT AGGGCTTGGG CTGACTTATG AGCAACTCAC CGGCGACCTC
ACTGGGGTGA ACTACTCCTC CATCCGTGCT GGCATGGTGG AGTTTCGCCG CCGCATGGAA
CAGATCCAGC GCATGGTCTT GATCCATCAG CTTTGCCGCC CTGTATGGGA ACGGTGGATG
GATCAGGCTG TTTTGTCGGG TGCTTTGCAG CTTCCCGAGT ACAGCAAACG CCGCCGTGAA
TATCTGGCGG TGAAGTGGAT ACCTCAAGGG TGGACCTGGG TGGATCCACA AAAAGAGATG
AACTCCATCA TCTGGGCGAT CCGGGCTGGT CTGCTCAGTC GGGCTGAAGC AGTCTCTACC
TACGGCTATG ACATCGAAGA GATCGACCGG GAGATCGTAG CCGATAACAA GCGTGCCGAT
GAACTGGGGC TTGTGTTTGA CTCTGACTCA CGGCGTACTT CCCGGTCGGG AGTATCACGG
GACAGCAAGC AGAGTGATAA GGAGTTGGTA GATCTGAAAG AGTAA
|
|---|
| Protein sequence | MKLFKRLFGG PPKRRAGYEG AASGRRLGNW QPEEAGINAL LFRDATLMRA RSRDLVRRNA
WASNAVDSLV GNLVGTGIKP QSTVKDPQIK AQIQSLWLAW TKEADAHGML GFYGLQALIA
RAMIEGGEVL VRLRNRDARD GLLVPLQLQV LEPEHLPASD SRDLPNGHRV RAGIEFDKIG
RRVAYHLFRE HPGEQPMLFK AGDVVRVPGS EVCHIFKPLR PGQLRGEPWM AQALVRLHEL
DQYDDAELVR KKTAALIAGF ITKPDPELGV GGEDGQDPDE QGAVPVTWAP GTMQVLLPGE
DVKFSDPADV GGQYGEFMRT QLRAVAVGLG LTYEQLTGDL TGVNYSSIRA GMVEFRRRME
QIQRMVLIHQ LCRPVWERWM DQAVLSGALQ LPEYSKRRRE YLAVKWIPQG WTWVDPQKEM
NSIIWAIRAG LLSRAEAVST YGYDIEEIDR EIVADNKRAD ELGLVFDSDS RRTSRSGVSR
DSKQSDKELV DLKE
|
|---|
| |