| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2488 |
|---|
| Symbol | |
|---|
| ID | 4484158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 3174246 |
|---|
| End bp | 3175172 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639723236 |
|---|
| Product | hydrogenase accessory protein HypB |
|---|
| Protein accession | YP_866394 |
|---|
| Protein GI | 117925777 |
|---|
| COG category | [K] Transcription
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0378] Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase |
|---|
| TIGRFAM ID | [TIGR00073] hydrogenase accessory protein HypB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.248349 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGTGATA CCTGCGGATG CAACCTCACC CCCGGCACCA CAGAGGCAGA TGGGCAGCAC
GCCACCGAAA CCGTAGCGGT GATGGCGGGC TTAATGGCCA ACAATGACCG GCGTGCGGCC
CATAACCGGC TCCATTTTGA TCGCCATGGG GTGTTGGCGG TCAACCTGAT GTCCTCGCCG
GGGTCGGGCA AGACGGCGCT GCTGGAGGCC ACCATTGTGG CGCTAAAAGA TGAGTTTCGC
ATGGCGGTGG TGGAGGGGGA CCTGGAGACC GAAAACGATG CCCAGCGCAT CCGCGCCCAA
GGGGTGCCTG CGGTCCAGAT CACTACGGGC AACGCCTGCC ACCTGGATGC AGCTATGGTG
CATGATGCGC TGCATGAACT GGATTTAACC CAGCTGGACC TGATTTTTGT GGAAAATGTG
GGCAATTTGG TCTGTCCGGC GGGGTTTGAT CTGGGGCACC ATCATGATGT GGTGTTGCTG
TCGGTCACGG AGGGGGATGA TAAACCCAGT AAATATCCCG TCATGTTTCG GCAGGCCGAG
CTGCTGCTGC TGAGCAAATG TGACCTGTTG GCGGTGCTGG AGGATTTTGA TCCTGTGGCG
GCAGAGAAAA ATCTACGTGC CTTAGCCAAT GGTGCGCCGG TGTTGCCGAT CTCCGCCCGT
AAAGGGGTGG GTATGCAGGC ATGGTTCGAT TGGCTGCGCC AGGCCATGCA CGCCCAGCGG
GCCCGCTTGG TAGATCAACC CCAGGGTGGG TATCACCACC ACCATGACCA CAATGGTGAG
CACCACCACC ATGACCACGA TGGTGCCCAC CACCATGACC ACGATGGTGC CCACCACCAT
GACCACGATG GTGAGCACCA CCACCATGAC CACGATGGTG CCCACCACCA TGCTGATGCC
CATGCCCACC ACCGGGGTGA AGGGTAA
|
|---|
| Protein sequence | MCDTCGCNLT PGTTEADGQH ATETVAVMAG LMANNDRRAA HNRLHFDRHG VLAVNLMSSP
GSGKTALLEA TIVALKDEFR MAVVEGDLET ENDAQRIRAQ GVPAVQITTG NACHLDAAMV
HDALHELDLT QLDLIFVENV GNLVCPAGFD LGHHHDVVLL SVTEGDDKPS KYPVMFRQAE
LLLLSKCDLL AVLEDFDPVA AEKNLRALAN GAPVLPISAR KGVGMQAWFD WLRQAMHAQR
ARLVDQPQGG YHHHHDHNGE HHHHDHDGAH HHDHDGAHHH DHDGEHHHHD HDGAHHHADA
HAHHRGEG
|
|---|
| |