Gene Mmc1_2480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_2480 
Symbol 
ID4483728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp3159046 
End bp3161745 
Gene Length2700 bp 
Protein Length899 aa 
Translation table11 
GC content58% 
IMG OID639723228 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_866386 
Protein GI117925769 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.618287 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.57938 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGACAACG ACCCTCTAGA GAGCCTGGCC CAACGCATCG CACATATGCA TGGGGCGCTG 
GAGGCCAGCC AGAAGATACA GAATGCCTTG GTGGAACGCG CCGAACGCCA AGGGGGGGAG
ACCCCCTTTA CCCTGTTTGA GCGGCATGCT TTGCTGGATC AACAGCTACG CCGTTCGCGG
CAAGCGCTAC GCCATGCGAG GCGCGCCCTA GAGCATGAAC GCAGCCACCA CCAACAAACC
CTCCGCCAGC AGCGGGTGGA GAGCTTGCGC CATCACACCA TTGTGGAGCA TGCCAGCGAC
GCCATTTTAC AGGTCAATGG CGAGGGAGAC ATCCTCTACA GCAATCCAGC GGCACACAAG
CTGTTTGGCT ATGACGAAGC GGCCTTGGCG AAAACGCCCC TGAGCACTCT GTTTCCAAAC
CAACACCAGA GCCGCAGCCA ATCGGTCACG CTCTCTCTGC GACAAGATGC TGGACACGAC
CACGCCCTAG CCTGGACCGC TCTGCGCAAC GATGGCGGTT TAATAGACGT AGGGGCCTTT
ATCAGCCCGG TAGAAGCGGA AGATCAGGCG CTTTACACCC TTATTTTGCA CGATCTTTCC
CTCCAATTAC GGCTGCATCA AGCCCAGGAA GAGAGCCGTG ATCAAGCCCT TACCAGCGAC
CGCATCTGGA CCCAACTGCT CGACCGCATG ACGGAACAGT TGCGCACCCC CCTGCACAAT
CTCGCGGGTC TGTTGGAGTT GCTGCAAAGC AACCCGCAAA AGGCGGCCCA ACAGGGTTAT
TTGGAGAGTG CCCGCACCAC CGTCTCGGAG CTGCTGCAAC AACTGCAAAT GCTGCCCAAC
CACACAACCT TGCTTAGTGC GCCGCTGGCG GGTGAACGTT TGACCTTTGA TCTCCTGCAA
ATGTTAGAAG GCACCACCCG CCAGTGGGCC AGCGTTGCCC AACAAAAGGG GCTGCAACTG
CTCTGTATGG TACCGCCGCA ACTGCCTGCG ATCTGGGAGG GTGACTTAAC CCGCCTGCGG
CAGGTGGTGG GGGGATTGTT GGAACGTAGC GTGGGTGCCA CCCAGCAGGG CACGGTTTGC
CTCTCCCTAC ACGCCCAGCA ACAGCCTAAT TCCAGTTGGT ATGAGCTTGA GATCTGCATT
GCCGACAGTC GCCCCCCGAT GCAGACCGAG CAGATGATTG CTCTCCAGCA ATTTTTGCGG
CAAGAGGGGC AGGCAGGCCC CTTGCATGAT GGGGCAGAAA CCCTGTCGCT GGCGATTATC
CGTCAATTGG CGGGGTTTAT GCGGGGTCGT TTAGAGTTTG CCTTTGACCA TGAGCGGGGG
GAGAGCCGTT TTATCCTCAG CTTACCGCTA CTGCCGGGCC CACAACCTAG CCAGCCGTTA
ACCAGGGAGC TACTGGGCCG ACGAATTTTA ATTTTAGAGC CCTATCCAGC CTACGCGAAC
TATCTCGCCA CCCTCTGCCA GCAGTGGGGC ATGGTTGCCC ACAGCACCAG CAGCGAGGCG
CAAGCCATCG CAACATGGCA GGGGTTGCAG CAGTTGGGCA TGCTGCCGGA GTTTATGTTA
GCCCCACCGG CAAACCCCGA CCAGCCCGCA CCTTGGCGCG ACGCCCCAGC GGGAACCCTG
CATCTGTTAA CCCTAACCCG TGGGCCGACC CCAAACCAGC CTGCTAGCCT GTGCAAACCG
CTCTCCCGCC AAGCTTTGTA CGAAGCCCTT ACCCAACAGC GACAGGATGC CCCCGCTGCA
TCCCCTGCTT TACCTTCGCA CATCACCAAC CCACTACGCC AAGATCGCCT TTTATTGGTT
GAGGATAACC CCATCAACCA AAAGGTCGCC TTAGGCATGC TCAAGCGGTT TGGTTTTCAA
GCCACCGTCG TGGACCGTGG GGCCAAGGCG TTGCAAGCGG TCAAAGAGCA CCCCTTTGAT
CTGATATTAA TGGATATTCA AATGCCAGAG ATGGATGGTT ATGCCACCAC TGCGGCGATC
CGCCACTGGG AGCGCGAGAG CGGCACCCCG CGCCAGCCTA TCTCGGCCCT AACGGCCAAC
GCCATGAGCG GCGACCGGGA GCTCTGTTTG GCCGCCGACA TGGATGACTA TCTCAGCAAG
CCCCTTAAAC AGGAGGCTCT GTGGGATTTG CTCAAGCGCT GGTTAAACGA TCTGCCTGAG
CACCCCCCCA TGCTGGAGCG ATCACCCCTT GCTGAGCCAG CCACCTTAGC CCCGCCTCTA
CCCGCTGCCA AACCAGCAGA AAAACCTGTG GAAGCAGAGC CTGCCTCCAA CCCAACGACC
CGTTGCCTAG ACCATGGTAA ATTAGATGAG CTTGAACGTA TGATGTCGGT TATGGAGAAT
GGCTTTCAAG AGTTGCTTAG CCGTTATCTC AGCGACACTC CAGTTTTGTT GCAAAATTTG
GCCGCCGCTG TCGAGGCACA GGATGCCAAG CAGGCCCGCC AACTGGCCCA CAATCTTAAA
TCCACCAGCG CCAGTCTGGG GGCCAAGCTA CTTTCGGTGC AAGCTCAGCA GATAGAAGCG
TTGAGCAAAC AGGGGCAAAC TGCGTTAATT CCACCCCTAC TGCCCGATCT GCTCCACCAT
TTTCAACAGG CCGCGCGGGA GATGGCACAA CGCTTATCCC TTACGTCGAG CGGTTCAGGG
GATGTGCCCC AGTCGCAAAA AGCGTGCGTT TCAGCCAATT TTAACACCGC TCTGGGTTAA
 
Protein sequence
MDNDPLESLA QRIAHMHGAL EASQKIQNAL VERAERQGGE TPFTLFERHA LLDQQLRRSR 
QALRHARRAL EHERSHHQQT LRQQRVESLR HHTIVEHASD AILQVNGEGD ILYSNPAAHK
LFGYDEAALA KTPLSTLFPN QHQSRSQSVT LSLRQDAGHD HALAWTALRN DGGLIDVGAF
ISPVEAEDQA LYTLILHDLS LQLRLHQAQE ESRDQALTSD RIWTQLLDRM TEQLRTPLHN
LAGLLELLQS NPQKAAQQGY LESARTTVSE LLQQLQMLPN HTTLLSAPLA GERLTFDLLQ
MLEGTTRQWA SVAQQKGLQL LCMVPPQLPA IWEGDLTRLR QVVGGLLERS VGATQQGTVC
LSLHAQQQPN SSWYELEICI ADSRPPMQTE QMIALQQFLR QEGQAGPLHD GAETLSLAII
RQLAGFMRGR LEFAFDHERG ESRFILSLPL LPGPQPSQPL TRELLGRRIL ILEPYPAYAN
YLATLCQQWG MVAHSTSSEA QAIATWQGLQ QLGMLPEFML APPANPDQPA PWRDAPAGTL
HLLTLTRGPT PNQPASLCKP LSRQALYEAL TQQRQDAPAA SPALPSHITN PLRQDRLLLV
EDNPINQKVA LGMLKRFGFQ ATVVDRGAKA LQAVKEHPFD LILMDIQMPE MDGYATTAAI
RHWERESGTP RQPISALTAN AMSGDRELCL AADMDDYLSK PLKQEALWDL LKRWLNDLPE
HPPMLERSPL AEPATLAPPL PAAKPAEKPV EAEPASNPTT RCLDHGKLDE LERMMSVMEN
GFQELLSRYL SDTPVLLQNL AAAVEAQDAK QARQLAHNLK STSASLGAKL LSVQAQQIEA
LSKQGQTALI PPLLPDLLHH FQQAAREMAQ RLSLTSSGSG DVPQSQKACV SANFNTALG