| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2450 |
|---|
| Symbol | |
|---|
| ID | 4481897 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 3122863 |
|---|
| End bp | 3125718 |
|---|
| Gene Length | 2856 bp |
|---|
| Protein Length | 951 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639723198 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_866356 |
|---|
| Protein GI | 117925739 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.065238 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.870771 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGATG CATCTTTATT GTTACGGCTT TTTCTGGGAA CGCTGTTGCC CAGTGCCTTA
CTGCCTCTGC TTATTGCGGT TGGGCTGCGC TATGGTATGG GTGAGCAGCT GTGGGCGCAT
GCAGGATTGC ACGCGCTGGT GGAGGCTCTG GTCGGGTTCA TGGGGCTCTT TGTGGCGGTG
GTGATTAAGC TGCTGCATCG CAATCAGCAG GTGAATGGTC GTTTATTATG GCTCTGTGCG
GGGCTGGTGC TCTCCATTCC TTTAATGGCG CTGCATACGG CACCGGGCAG CGATGAAAAT
GTGGTGATCT GGCTCTACGC CTTGGCAACC TTGTTGGGGG GGGGCGTAAG TGCCGGAATG
TTGCTTGGGG AACAGTGGCA TAGCCAGCCT AGATTACCAT ATGCCGCTCT GCTGATCGCG
TTAGGGTTGA TGGGCTGGGC GATGTTTTTT CCTGAACATA TTCCGGACAT GGGGCAGTGG
TCGCAGTTGA GCGATTTAGC GGTTGGTATG AACCTGATTG GGGCACTGGG TTTTGTATTG
GCGTGGTTTG CCCTGATCAG CGGTCATGTG GTATCAGGCC GCAGGGCACC GCTGCTGTTG
GGCAATTTTA GCCTGCTCAT GGCCAGCGCG GCCATCATTT TTTTGTTGGC GGATACCTGG
GACAGCCGCT GGTGGTTTTA TCACTTTTTG CGTCTCGCAG CGTTGGCTCT CTTGCTGAGT
TATTTCTTTG CGCTCTACTT AAAAGATTTT CGCGTGCTAC GGGAGAACGA TGCCCGTTTT
CAAGCGCTGG TTGAGAGCAT CCATGCAGGG GTTTACCGTA CTCAGGTTAC GCTGGAACGC
CGCTTGGTCT ATGCCAGCGC GCAAATGCAT CAGGTGGCCG GTCTCTCTAT GCAGCAGTGT
CAAGAAGGAG GGGTTAGCTT AAAAAGCTTG GTCGTGCCCG AAGATTGGCC CCATGTGCAA
GAGGCGCTGG AGTGGTCGAT CAAGACCCAT GTGCCCTATG AGATGCAATA CCGTATTAAC
CACCCGCAGC GGGGCGAAAT GTGGGTTAGT GATCGTGGAC GCATTATTAA GGATCACCAA
GGTCAACCCT GTTGGTTTGA TGGCGCGCTA TTAAACATCC ATGAAGCCCG CGAAACCGAA
CAGCAACTGT TGTTGGCTAA ACAGGTCGTG CAAACAGCAT CCGAAGCGAT TGTTATTACC
AACCATAAAA ACCAAATTAT GGATGTGAAT CCGGCCTATG AGCGCATTAC CGGTTTTATG
CGCCATGAGG TGCTGGGGCG TAACCCCAAA ATCACCCAGT CGGGTCGTCA TGACGCCAGC
TTTTACGCCA CCATGTGGAA ACATTTGGTC GGGGAGGGCC ACTGGAGCGG TGAAATTTGG
GATCGTCGCC GCAACGGTGA GATTTTTCCT AAATGGCTTG CCATTAGTGC CATCCGTAAT
CGGCAGGGGG TTATCTCCCA CTTTGTTGGG GTGTTTAATG ACATTAGCCG CCAAAAAAGT
ACCGAACAGC AGTTGGAGCG ATTGGTCTTC TATGATCCTT TGACCCAGCT ACCCAACCGG
GTGCTGTTTC GGGACCGTTT GATCCATGAG GTGGGGGTCG CAGAGCGTTC CAATAAATTG
ATGAGTCTGC TGTTGGTGGA TCTGGATCGC TTTAAAATCA TCAACGACAC CCTAGGGCAT
GGGGTGGGGG ATGAGCTTTT GTTACAGGTC TCGAAGCGGT TGATTGCCAG TGTGCGTAAA
AGTGACACCG TGGCGCGCTT GGGGGGGGAT GAATTTGCCA TTATTCTACC CGGCATGGAA
CGGGCAGAAG ATGCCGCCCA TGTGGCCGAG ACCATTATCA ATCAGTTGCA GGTGCCTTTT
TCTATTGAAG AAAATGAGCT TTTTGTCGGT GCCAGTATTG GCATCGCGGT ACATGGCCAG
GATGGTGACG ATTACGACAG TTTGACCATG AATGCCGACG CCGCCATGTT TAAGGCTAAG
GAGTCGGGAA AAGGGACCTA TAAATTTTTT ACACCGGATA TGAACATCCA GAATGCGAAA
CGCTTGGTTA TGGAAGCCGA ATTGCGTCGC GCTGTGGATA ACCAGGAGTT AATGCTGCAT
TACCAACCCA AAGTGGATGC AGAGAGCCGT CAAATTGTGG GTATGGAGGC GTTGGTGCGT
TGGGTGCACC CAACGCGTGG GGTGATTCCC CCTGGAGAGT TTATTCCATT GGCCGAAGAG
ACAGGCTTGA TTGTACCGCT GGGCGAATTG GTGCTCACCC GTGCTTGTGC CCAGGTTAAA
CAGTGGTGGG ATATGGGGCT GCCCCAGGTC CAGGTGGCGG TGAATTTATC ACCCCGGCAA
TTCCAAGAAC CCAATCTTAT TGAAAAGGTA TCGGAAATTT TGAGGAAAAC CGGTTTTCCT
GCAACGGGGT TGGAGTTGGA AATTACCGAG AGCATTGCGA TGCACGATGT GGATAACACC
ATTGAGACGG TAAAAAAGCT CAAGGATTTG GGGGTGCGTA TCTCCATTGA TGATTTTGGC
ACGGGTTATT CGTCCTTGAG CTATCTGAAG AAATTTCCTT TGCATGCTTT AAAGATTGAT
CAATCCTTCG TGCGGGATCT GGGTGGTGAT GACGATGGCG CCAGCATTAT CTCCTCCATC
ATCTCCATGG CTAAGGCGAT GGCGCTGGGG GTGGTGGCCG AGGGGGTGGA AACGGCTCAA
CAGATGGAGT TTTTGCGCGG TCAGGAGTGT CAGCAAGTGC AGGGTTTCTT TTTGAGCAAA
CCCCTGCCGC CATCGGATTT TTTAGCACTC CTTGAGCGCC AGCAGGAGAC CGGCTGCGCC
GTTACGGATG TTATGGGAGG GAAGGCTATA ACTTAG
|
|---|
| Protein sequence | MMDASLLLRL FLGTLLPSAL LPLLIAVGLR YGMGEQLWAH AGLHALVEAL VGFMGLFVAV
VIKLLHRNQQ VNGRLLWLCA GLVLSIPLMA LHTAPGSDEN VVIWLYALAT LLGGGVSAGM
LLGEQWHSQP RLPYAALLIA LGLMGWAMFF PEHIPDMGQW SQLSDLAVGM NLIGALGFVL
AWFALISGHV VSGRRAPLLL GNFSLLMASA AIIFLLADTW DSRWWFYHFL RLAALALLLS
YFFALYLKDF RVLRENDARF QALVESIHAG VYRTQVTLER RLVYASAQMH QVAGLSMQQC
QEGGVSLKSL VVPEDWPHVQ EALEWSIKTH VPYEMQYRIN HPQRGEMWVS DRGRIIKDHQ
GQPCWFDGAL LNIHEARETE QQLLLAKQVV QTASEAIVIT NHKNQIMDVN PAYERITGFM
RHEVLGRNPK ITQSGRHDAS FYATMWKHLV GEGHWSGEIW DRRRNGEIFP KWLAISAIRN
RQGVISHFVG VFNDISRQKS TEQQLERLVF YDPLTQLPNR VLFRDRLIHE VGVAERSNKL
MSLLLVDLDR FKIINDTLGH GVGDELLLQV SKRLIASVRK SDTVARLGGD EFAIILPGME
RAEDAAHVAE TIINQLQVPF SIEENELFVG ASIGIAVHGQ DGDDYDSLTM NADAAMFKAK
ESGKGTYKFF TPDMNIQNAK RLVMEAELRR AVDNQELMLH YQPKVDAESR QIVGMEALVR
WVHPTRGVIP PGEFIPLAEE TGLIVPLGEL VLTRACAQVK QWWDMGLPQV QVAVNLSPRQ
FQEPNLIEKV SEILRKTGFP ATGLELEITE SIAMHDVDNT IETVKKLKDL GVRISIDDFG
TGYSSLSYLK KFPLHALKID QSFVRDLGGD DDGASIISSI ISMAKAMALG VVAEGVETAQ
QMEFLRGQEC QQVQGFFLSK PLPPSDFLAL LERQQETGCA VTDVMGGKAI T
|
|---|
| |