| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2390 |
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| Symbol | |
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| ID | 4481941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 3034371 |
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| End bp | 3036140 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639723138 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_866296 |
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| Protein GI | 117925679 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.844303 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAGGG GGTCTGCCCA AACCCAGCAA GGTGTGCCGC AATCCCTGGA TGCGATCCAG
GTAGAGGGCG CCTCACGACA GCAATTGGAG CTGTTTCGTG CCCTGCTGGA TCAAGCCCCC
GATATGATCC TTTTGGTGCG CATGCAGCCA AACCTGCCGT TTGTGGACGC CAATGGCTTG
GCCCGTCAAA AATTGAGCCT AAATCCAGCA GAAAATGTCC AGCATGAGAT GGCCAAACGG
TTAGGCAAAG CCCTTGTGCA GCGCATATGG GATCTTTACG GAGAGGGAGG GCTTTCGGAC
GAGGACCGGC CTGTCAACAT AGAGAGCAGC CTCGACCTGC AAGATCATGC CCGGTGTCCG
GTCGAGGTGA GCCTGCGCTG CGTCACCCTG CAAGGGCAGC GCTATGGTGT TTTAATAATC
CGTGATGTCC ATATTCGCAA GGATCATGAA GAGGCCATTC TTCAACAAGC CAATTTTGAT
ACCCTTACCG GGCTGCCCAA CCGCACCATT ATGCTGGACC GTTTGGGGCA GGCCATTTTT
CGTGCCCAAC GGGGCCGAGC ACGGGTGGGG TTGATTTGCC TGGACCTAGA TCGCTTTAAG
CAGGTCAATG ATTTTGTGGG GCATAGCCAG GGGGATGACC TGCTCAAACA GGTAACGCAG
CGCTTAAAAG GGTGCATCCG CAGTGAAGAT ACCCTGGCGA GAGCCGGGGG GGATAAGTTT
GTGGCGATCC TGCAACAGTT GCACGAGCCC GCCCAAGCAT TGATGGTTGC CGAAAAAATG
TTGGATGTGC TACGCCAACC CCTGGCGTAT GAAGATCACC AACTGGTGGT GACCGCCAGT
GTCGGTCTGA CCCTCTATCC CGATAATGGT TTAACGCCCG AAGTTCTGTT TAGCCATGGG
GATCGGGCCA TGTATCAAGC CAAAGAGGAT GGCCGCAACT GCCTACGCTT TTACACCGCT
GAGCTGGACC AAGTGGCCCG CACCCGTATT GAGATTGAAT CACACCTGCG TCAGGCGCGG
GTGCAGGGTG AGCTAAGTTT GGTCTATCAA CCCTTGGTGG ATCTACAGCG GCGTCAAATT
ATTGGGGCTG AAACGCTGTT GCGCTGGACC AGCGCCCGAC TGGGTGAGAT GTCCCCCGAA
CACTTTATCC CTATTGCCGA GGATTCTGGG GCCATCCAAG AGATTGGCAC CATGGTGTTG
CAGTCTGCCT TTGTGCAAGG GGCCTTGTGG GCTCGGCAAA TGGGGGCGTT TCGGTTGTCG
GTCAATGTTT CGGTGCGGCA GTTTAAATCC CCTGATTTTG TGCCGCTGAT CGCAGGTTTA
ATGGCAGAGG CCCCCCCAGA GCTGGTGTTG GATCTGGAGC TAACGGAACA CTTGTTGATG
GAAGATGACC ATAAAGTGGC AGAAACCCTG CTCCAATTAA AAAAATTGGG GGTGCATCTC
TCCATTGACG ATTTTGGCAC CGGTTATTCG TCCCTAAGCT ATCTCAAGCA ATTTCCGATT
GATATTCTTA AAATAGATCG CGCCTTTGTG CGGGATGTGG ACCAGGATGA AAACAGTGCC
TCCCTCACCC GCGCCATCCT CTCTATGGCA AAAAGTTTGA ACCTAGACAT TGTGGCCGAG
GGTATTGAAC GTCCCCAACA TCTGGATTTT CTGCTAAAAC ATGCCTGTCC TTGGGGGCAG
GGTTATCTGT TTAGTGAGCC GGTGCAACCC GCCCGCTTTG ACCGTTTGTT GCTGGAGGGG
TTGCCCCGTG ATAAAGATTT TACCTACTAG
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| Protein sequence | MKRGSAQTQQ GVPQSLDAIQ VEGASRQQLE LFRALLDQAP DMILLVRMQP NLPFVDANGL
ARQKLSLNPA ENVQHEMAKR LGKALVQRIW DLYGEGGLSD EDRPVNIESS LDLQDHARCP
VEVSLRCVTL QGQRYGVLII RDVHIRKDHE EAILQQANFD TLTGLPNRTI MLDRLGQAIF
RAQRGRARVG LICLDLDRFK QVNDFVGHSQ GDDLLKQVTQ RLKGCIRSED TLARAGGDKF
VAILQQLHEP AQALMVAEKM LDVLRQPLAY EDHQLVVTAS VGLTLYPDNG LTPEVLFSHG
DRAMYQAKED GRNCLRFYTA ELDQVARTRI EIESHLRQAR VQGELSLVYQ PLVDLQRRQI
IGAETLLRWT SARLGEMSPE HFIPIAEDSG AIQEIGTMVL QSAFVQGALW ARQMGAFRLS
VNVSVRQFKS PDFVPLIAGL MAEAPPELVL DLELTEHLLM EDDHKVAETL LQLKKLGVHL
SIDDFGTGYS SLSYLKQFPI DILKIDRAFV RDVDQDENSA SLTRAILSMA KSLNLDIVAE
GIERPQHLDF LLKHACPWGQ GYLFSEPVQP ARFDRLLLEG LPRDKDFTY
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