| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2380 |
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| Symbol | |
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| ID | 4481931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 3020639 |
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| End bp | 3023851 |
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| Gene Length | 3213 bp |
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| Protein Length | 1070 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639723128 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_866286 |
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| Protein GI | 117925669 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.467753 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAGAGCC AAACGGTGGA TGGGCAACGT TCAGGGGTGG TTAGGTTGAT CCACGAGTGG
TCGGCTGCAC ACCGTATTTT TGCCATGATG ACGATCATGG TGGCGTTGGT GATCCTCGTC
GGTGGCATCA TTACCTACAC GCTCTATCTC AAAGCCTTAA ACGATACCCA ACAGCACCTT
TTGGAATCTG CGCGACAGCT CGCGCTCTCA CTGCAACTTA CCTCGCAGGA GTATGCGCTG
CGCCAGCAAA ACGCGAATGC GAGCCGCTAT GCGGGGCTAA CCGCCGCTGA ACAGCTGCGG
GTACGCCAAA ATGATGCGTT GCATAAATTG CGCACGCGCT TGCAGGCTGA ACAGGGCGGT
GAGCGTCTGC TGGGTTATCT CCACCTGGTG CAAATGGGGC AAGATGAGAT CCTTGTGCGG
CTTGATGAAC GCGCCCTTAG GGAGACATCC GTGCGGCGCT TGCCCCTAAA AGAGTATCAA
GATCATCCTT TTGCGCAAGC CCTTAGGGGT GAGTCCGGCT CTGCAATTGC CTTGGACTTG
AATGGGGAAA TGGCGTTGAT GGGCTTTACG GCGGTCCCTG ATCTGGGCTG GGGGGTGGTG
GTTCACTACC GTTTGTCCTA TCAGCGTAAG CCGTTTTTGC GCATTGCCTG GGGGCTGCTG
TTGGGGTCTG CCTTGGTGGT GGTGTTCGGT GGATGGCTGT TTATGCAAGT GGGTGGGCCA
CTCATCTCTG GCTTGGAACG CTACCAAGCC CGGCTGGGCT TGGCCATGGC GGCCTCTCGC
ATCGGCATTT GGGAGTGGGA TGTGGTCACG GGTAAGGTGG AGTGGGACGA AGGCATGCAC
CAGATCTTTG ATTTGCCAAA AGGGGCGTTT GATGGTACTT GGGAGGGCTT TTTGGCGCTG
TTTGATGGGG AAGATAGCGC ACGTTTGGAG CAGTGTCGTC AAGAGAGTTT GACCGAGCAA
CTGCGTTTTG AGCTGGAGTG TCGTACACAA CCGGTTGCTG GGGTTCAAAA AACCCTCTCC
CTACGGGGGG AGTTGCGCAT GCCCGAACAT GGGGTCGAGG CTCATTTGAT CGGGGCCTGT
TGGGATATTA GTGAGCAAAA ACAGGCCGAG CTTAAATTGC TGGAGAGCCG TCACCACCTG
GATCGTGCGC AACGTTTGGC GGGGCTGGGC TATTGGAGTT GGAATTTACA AGGTGATGAG
CAGTTTTGGT CCGAAGAGAT CTACCGCATG CTGCATCGTC CCAGGGCCCA TGTGAGTGCC
AGTTTTGAAA GCTATATGGA CCATGTACAC CCCGACGACC GCCAGCGGGT GCGGGATATG
GTGGCGCGGG TGCTTAAAGA GCCGGATCTG TTTTTTCGCG TGGAACACCG GATTGTGCGC
TCGGATGGTA ATGTGCGTAC CGTATTGCAG TTGGGCGATG TGGAGCGTTC GGCGTCGGGT
GAACCGGTGC GCATGACCGG TACGGTGCAG GATATTACCG ACCTTAAACG TACCCAAGAA
AACCTGGATC TGGCCAAATA TATTTTGGAT ACCACCAGTG ACGCGGTGAT CATTACCGAC
GTGAACAACC GCATTATTGA TGTGAACCAC GCTTATACCA AGATCACCGG TTTCAGTCGG
GATGAGGTGA TGGGTCAAAA TCCGCAAGTG GTGCACAATG AAGAGCAGGG TGAGGCCTTT
TATAGTCGCA TTTGGCAATC CTTGTTGCAG GAGGGACGCT GGTCGGGCGA GGTGTGGGAG
CGGCGCAAAA ATGGTGAGCT CTACCCCAAG TGGATGACCA TGCGACGCAT GCTAAACCAG
TATGGCGAGA CGGCCTTTTT TGTCGGCGTG TTTGTGGATA TTAGTACCCA AAAAGCCACA
GAAGAGCAGA TGGAGCGGTT GGCCTATTAT GACCCCCTGA CCAAATTGCC CAACCGGGCA
CTGTTCCACG AACGGTTAAC CCAATCCATT ACCACCGCCA AACGCTATAA ACGCCACGTT
GGGGTGGTGA TGCTGGACCT TAACCGCTTT AAATTAATCA ATGAGAGCTA CGGTTATGGG
GTGGGGGATG GTCTGTTGAT TCAAGTGGCC GAGCGCATTG TCGAGCGCTT GCGCGAGTCG
GATATTGTGG CACGTATTGG TGCCGATACC TTTGCCATCA CCTTGGTTGA CCTTAAACAG
GAGGGTGAGA TCACAGGTGT GGCCAATAAC CTGCTCAAAC AGTTTGTTAT GCCCTTTTTG
GTCAATGGCC ATGAGCTTAT GCTGCGTACC GCCATGGGGA TTGTACTCTA TCCAACCGAT
GGGCAGGATG CCGAAACCCT GCTGCGGCAC GTGGAAAACG CCCTGGGACA GGCCAAACAG
CAAGGGGTGA ATAACTATCG CTTCTATTCA GAAGAGATGT CTAACATCAG CAATAAACGG
TTGGCTCTGG AACAGGAGAT GCACACCGCA TTGGAGCAAC GGGATTTTGT GCTCTATTAC
CAGCCGAAAG TGAATTTGCA ACGGGGGGTG GTCTCTGGAG TTGAGTCACT GATACGTTGG
CAACACAAAC AGAAGGGCAT GATCTCCCCG GTTGAGTTTA TCCCCGTGGC CGAAGAGACT
GGCCTGATTG TACCCATGGG GTTGTGGATT TTAGAAACCG CCTGTGCCGA AGCCAAGCGC
ATTACCGACT ATTTGGGGCA ACCTTTTACC GTGGCGGTTA ACCTCTCGGC ACGGCAGTTT
CAGAGCCGTA ATCTGTTAGA GAGTATCTCT GAAACCCTTA ATAATAGCGC CATTGACCCC
AGCATGTTGG AGTTTGAAAT TACCGAAAGC ATGATGATGG GCAATGTGGA AAAGAGTATT
GAGACCTTGG TGGCGATCCG TAATATGGGG GTTACGTTGG CCATTGATGA TTTTGGTACC
GGCTACTCTT CCCTAAGTTA TCTCAAGCGT TTCCCCATCA ACACCCTAAA AATTGACCAA
TCATTCATCC GGGATTTGGG GGTGGATTCG GATGATGCGG CGATTGTCTC GGCCATTATC
TCCATGGCCC AGGATCTCAA CCTGCATGTG GTGGCTGAAG GGGCTGAAAA AGCCGAGCAA
GTGCTCTTCT TAAAAGAGCG CGGCTGTGAA ACGGTACAGG GTTACTATTT CAGCCGCCCT
TTGCCGCAAA CGGATCTGGA GCGCCTGCTG AAAGACCCCA ATGGCATTAA GATGCCGCCG
ACGGTGGAAA TGGGCAAATT GGTCGAGGTT TAG
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| Protein sequence | MESQTVDGQR SGVVRLIHEW SAAHRIFAMM TIMVALVILV GGIITYTLYL KALNDTQQHL
LESARQLALS LQLTSQEYAL RQQNANASRY AGLTAAEQLR VRQNDALHKL RTRLQAEQGG
ERLLGYLHLV QMGQDEILVR LDERALRETS VRRLPLKEYQ DHPFAQALRG ESGSAIALDL
NGEMALMGFT AVPDLGWGVV VHYRLSYQRK PFLRIAWGLL LGSALVVVFG GWLFMQVGGP
LISGLERYQA RLGLAMAASR IGIWEWDVVT GKVEWDEGMH QIFDLPKGAF DGTWEGFLAL
FDGEDSARLE QCRQESLTEQ LRFELECRTQ PVAGVQKTLS LRGELRMPEH GVEAHLIGAC
WDISEQKQAE LKLLESRHHL DRAQRLAGLG YWSWNLQGDE QFWSEEIYRM LHRPRAHVSA
SFESYMDHVH PDDRQRVRDM VARVLKEPDL FFRVEHRIVR SDGNVRTVLQ LGDVERSASG
EPVRMTGTVQ DITDLKRTQE NLDLAKYILD TTSDAVIITD VNNRIIDVNH AYTKITGFSR
DEVMGQNPQV VHNEEQGEAF YSRIWQSLLQ EGRWSGEVWE RRKNGELYPK WMTMRRMLNQ
YGETAFFVGV FVDISTQKAT EEQMERLAYY DPLTKLPNRA LFHERLTQSI TTAKRYKRHV
GVVMLDLNRF KLINESYGYG VGDGLLIQVA ERIVERLRES DIVARIGADT FAITLVDLKQ
EGEITGVANN LLKQFVMPFL VNGHELMLRT AMGIVLYPTD GQDAETLLRH VENALGQAKQ
QGVNNYRFYS EEMSNISNKR LALEQEMHTA LEQRDFVLYY QPKVNLQRGV VSGVESLIRW
QHKQKGMISP VEFIPVAEET GLIVPMGLWI LETACAEAKR ITDYLGQPFT VAVNLSARQF
QSRNLLESIS ETLNNSAIDP SMLEFEITES MMMGNVEKSI ETLVAIRNMG VTLAIDDFGT
GYSSLSYLKR FPINTLKIDQ SFIRDLGVDS DDAAIVSAII SMAQDLNLHV VAEGAEKAEQ
VLFLKERGCE TVQGYYFSRP LPQTDLERLL KDPNGIKMPP TVEMGKLVEV
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