| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2358 |
|---|
| Symbol | |
|---|
| ID | 4482057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 2992572 |
|---|
| End bp | 2994266 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639723106 |
|---|
| Product | TrkA domain-containing protein |
|---|
| Protein accession | YP_866264 |
|---|
| Protein GI | 117925647 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0569] K+ transport systems, NAD-binding component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTAA AAAGCATCTA CTATCAGATT TTTCGGCGCA TGCGGTTTCC ATTGCTGCTG
CTGCTGGGTA CTTATGCCAT AGCTATTTTA GGCATGACCT TGATTCCTGG TGTGGATGAT
CAAGGCAATC CGTGGAAGAT GTCCTTTTTC CATGCGACCT ACTACGTAAG CTATATGGCT
ACCACCATTG GTTTTGGGGA GATCCCCTAC CCCTTTTCCG AGGCACAGCG TCTGTGGGGG
ATATTTTGCA TCTATCTCAA TGTAATTTCC TGGCTTTATG CCATTGGGTC GATTATCAAC
ATCATGCAGG ACGCCGCCTT TAGACGGGCC TTGGTCGAAT TAAAATTTAG CAGCATGGTG
CGTCATTTGG GCGAACCCTT TTATATTTTG TGCGGTTTTG GGGATACCGG TACCGCACTG
GTACGTGCCC TTACCAACCG TGGCATTTAT GCTGTGGTTT TAGATCAGAA AGAAGCGGCC
ATCAATCGCT TGAACCTCAC CGATTATCAA TTGGATGTAC CCGCGCTCTA TGGCGATGCC
ACTATGCCAG ATACCCTAAA GCTGGCAGGG CTCGAACACC CCCGGTGTAA GGGGGTGGTG
GCCATGACGG ATAAAGATGA GGTTAACCTA AAGATTGCCA TTACCAGCAA ACTGCTCAAC
CCAAAGCTGC CGGTGATCTG TCGTGGTGAG CGCCCCGATT ATGAAGAGAA TATGGCCTCC
TTTGGTACGG ACCATATCAT TGATCCCTAC CTGACCTTTT CCAGCCGGTT AAGTCTTGCC
CTGGATAAAC CAGGCGTCTA CACACTTTAC AATTGGTTGG CAGCCATCTC TCGCGCACCG
CTGCCCGACC CCATTTTTCC GCCAAAGGGA AAATGGGTAC TTTGCGGTTT TGGTCAATTT
GGTCAAGCCA TGCACGCCCG CTTAACCACC CAGGGCATCA CTGTGGTCAC AGTTGAGGTG
GACCCCGAGG GAACCCATAG CCCACCTGGC AGTATTCAGG GCTGGGGTAC CGATCACGAT
ACCCTGCATA AAGCGGGTAT CGAAACTGCG GTTGGCTTGG TTGCTGGTAC GGAAAATGAC
ACCAACAATC TTTCCATTGT TATGACAGCA CTTGAGATGA ACCCTAACCT GTTTGTGGTA
ACGCGGGAAA ACCGACGCTA TAATAGAGAA CTTTTTCAAA AGGTCGGGGC TGATTTGGTC
ATGCAGAGCA GTGAAATTCT CGCTCGCGAG GTACGCCTGC TGCTCACCCT ACCCTTGGTC
AGAGATTTTT TGCGTGAAGT CGAAAAGATG GATAATGAGT GGGCCAACCA GACGGTTAGC
CGTATTGCAG GTATTGCCGG CGAAACGGTA CCCGATGTGT GGGATGTGGA GATCAACGCC
ACGCAGACCC CGGCGATTAT CCTTCAACTG GATCGTGGTC AAAGCATCAC CCTAGCCCAT
GTACAGAGCA ACCCCCGACA GCGTGAACAC ACCTTGCCCA TGCTGGCCCT GTTTATTCGC
CGTAGCGACG GTTCCTGCAT GGTGTTACCG CCTCCAGCTT GTCCGCTGTT TGATGGGGAT
CGAGTCCTTT TTTGTGGGGA TTATGGCATT AAACAGCGCA TGCAGTGGAC CCTCTATAAC
GATGCCCTGC TGAACTATGT TATAAGCGGT GATGAGCAGC GCCAAAGCTG GTTGATGCGC
AAATTCCGGG CATGA
|
|---|
| Protein sequence | MILKSIYYQI FRRMRFPLLL LLGTYAIAIL GMTLIPGVDD QGNPWKMSFF HATYYVSYMA
TTIGFGEIPY PFSEAQRLWG IFCIYLNVIS WLYAIGSIIN IMQDAAFRRA LVELKFSSMV
RHLGEPFYIL CGFGDTGTAL VRALTNRGIY AVVLDQKEAA INRLNLTDYQ LDVPALYGDA
TMPDTLKLAG LEHPRCKGVV AMTDKDEVNL KIAITSKLLN PKLPVICRGE RPDYEENMAS
FGTDHIIDPY LTFSSRLSLA LDKPGVYTLY NWLAAISRAP LPDPIFPPKG KWVLCGFGQF
GQAMHARLTT QGITVVTVEV DPEGTHSPPG SIQGWGTDHD TLHKAGIETA VGLVAGTEND
TNNLSIVMTA LEMNPNLFVV TRENRRYNRE LFQKVGADLV MQSSEILARE VRLLLTLPLV
RDFLREVEKM DNEWANQTVS RIAGIAGETV PDVWDVEINA TQTPAIILQL DRGQSITLAH
VQSNPRQREH TLPMLALFIR RSDGSCMVLP PPACPLFDGD RVLFCGDYGI KQRMQWTLYN
DALLNYVISG DEQRQSWLMR KFRA
|
|---|
| |