| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2323 |
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| Symbol | |
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| ID | 4482779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 2957000 |
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| End bp | 2957872 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639723071 |
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| Product | RNA polymerase, sigma 32 subunit, RpoH |
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| Protein accession | YP_866229 |
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| Protein GI | 117925612 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000107256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.893759 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGTTA CTATGTTGGT TCCTTATAAA GGAGAAAACC AACTCGCCGG TTATATGCAG
CAGGTCGATA GCTACCCGAT GTTGTCAGCG GAGGAAGAGT TTGAGCTGGC GGTGCGTTAC
CGAGAGCAGA ATGACCTGGA AGCCGCGCAT AAATTGGTGA CCTCCTATCT GCGTTATGTG
GCCAGTATTG CCAAGGAGTA TCAAGGCTAT TACGGCATTA AGTTTATGGA TCTGGTGCAA
GAGGGCTCGG TGGGGTTGAT GCAGGCGGTC AAACGCTTTG ACCCCCACAA GGGGTTTCGC
CTCGCGACCT ATGCCATGTG GTGGATTAAG GCTTCCATCC AGGAATTTGT ACTGCACCAT
TGGTCGCTGG TTAAGATTGG TACCACCGCA GCCCAGCGCA AACTGTTTTT CAACCTGCGT
AAATCCAAGG ATACCTTGGA GCGTCTGGAT GCCACTCAGG CAGAGGAGAT GGGGCAGCGT
TTTGGGGTAA GCGGCGAGGC GGTGTTGGAG ATGGATGCCC GCTTGAGCGG TCCCGATGAT
AGCCTGAACC GTTGTTTGGT GGAGGGCGGT GAAGAGATCC AGAATATGCT GGCTGATAGT
GCTCCGAATC AGGAGATGCG GCTGTTGGCG AGCGAGTCTG AACGTCTGCA ACAGCAGATG
ATTAAACAGG CGCTGTCATT TTTAAGTGAG CGCGAGCAGA TGATTGTTCG TGCCCGCATT
ATGTGTGCTG AGCCCGTCAC GCTGGAGGTG CTGGGTGAGC GTTTAGGGGT CTCCCGTGAG
CGTATTCGGC AGTTGGAGAC GCGGGCTTTG AAAAAGCTGC GGGCCTTTTT TGAGGCCGAT
GGGGCTTCCT TAGAAGATTT AATGCCTGCC TAG
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| Protein sequence | MSVTMLVPYK GENQLAGYMQ QVDSYPMLSA EEEFELAVRY REQNDLEAAH KLVTSYLRYV
ASIAKEYQGY YGIKFMDLVQ EGSVGLMQAV KRFDPHKGFR LATYAMWWIK ASIQEFVLHH
WSLVKIGTTA AQRKLFFNLR KSKDTLERLD ATQAEEMGQR FGVSGEAVLE MDARLSGPDD
SLNRCLVEGG EEIQNMLADS APNQEMRLLA SESERLQQQM IKQALSFLSE REQMIVRARI
MCAEPVTLEV LGERLGVSRE RIRQLETRAL KKLRAFFEAD GASLEDLMPA
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