| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2227 |
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| Symbol | |
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| ID | 4481993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | - |
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| Start bp | 2839443 |
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| End bp | 2843270 |
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| Gene Length | 3828 bp |
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| Protein Length | 1275 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639722976 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_866134 |
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| Protein GI | 117925517 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.209837 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGTGC AACAACGGGG CAAATGGATG CAGCTATCTA TCGCACGCAA GGTGGTTTAC
GGCTTTGCCG TGCTGATTGT GTTGGCACTA TTCAGTGGCC TAATGGTCTC TTCTCAGCTT
GTGGTATTGC AGGATCGTGT GGCTCGGTTG CAAGGTCAGC GGGTCCCCTT GGTGGTCAAC
GCGGTCGCCT TTGTTAGCCA TGTCAAAGAT GCCCTTAGTG CTTTACAGAG TTGGATGACC
ACCGAACTTC CCCGCTTTAA ACAGGAGCGC CAACATGCCT GGCAGCAGGC CCGTCGCCAA
TTATTGAAAT TGGAACAGAT TTTGGTCACG GATCCGCGTT TGTTGGAGCA GTTAGAGCCG
CTTAAAGAGG GATTGACGCA ACTTGGGGTG CTGCAAGATC GCATTGAGGC GTTGATCGAA
AAACCTGCTA ACAAGCCTGC CCATCAGCTC TATAAAGAGC AGCTTTTGCC GATCCTTGAA
TCCTTGGATG TGCAGGTGCG GCGTCTTGTT TTGCGTGAAA ACCACCGTCC TGTTTTTGCC
GGGGGTGTGG CCGAAGCCAT CAACAGTCGT ACCCAGCTTA AAGAACTTGC GGATCTTCGC
AGTGCCTTGT CGCTCTGCCG CAGTCAGCTA GAGCGCATAC TCACGGAACC AGATGACGCG
CTGGTGCAAC GTTTTGGGCA GGGTTTAAAG CAGGCTGATG GGGCTTTGGC GGTGTTGGTA
CGGGCCGATA TGAGTCAAAC TCAGCGCCAA GAGCTCGGGC AGGTGCAGGA ACTGTGGAGT
GAATGGCCCG CTTTGGCCGA GCAGGTGATC GTCTTGCGTC AATCCGATCA TTGGAATTTG
GCGCGTCACC TGACGGGTGA TGCGCTGTTA CCCCTATGGC AAACCCTGCG TCAGCGGTTG
GACACCACGG TTGAGCAGCA GCTCACCACG ATGGTCGAAG AGGGGCGGTA TCTGGAGCAG
AGCATTGCGC TGAGCCGACA GGTGCTGTTT TTTAGTTTTG TCCTGTTGTT GGTGGCAGGT
GGATTGTGGG CGTGGTGGAT CAGTCATCGG CTGCGCAGTG GTTTTCACAC GCTGCTGCAA
CGGATGAGCT ATGTTAGTGA CCGCATACAA CAGGCTGACC TGACGGGCAA CTGGAGCGAT
TGTGACCTGG ATATTTGCTT GATCCCCAAT CACCAGCAAG ATGAAATCGG GGCTGCTGTG
AGTGCCTACA ACCAGTTGCT TACCAACTTG GTTGTCGCGC AGGGGAATGA GAGTCGTTTT
ATCGACTCAC TGACCCGCAT GCACGCCATT ACGGTACGTA CGGAGTGGGA CTCGCAGCGT
AAGATCCAGG AAATTTTGGA AATGGGTGGT GAGATTCTGG AGATGGAGTC GGCCATTGTG
ACCCATGTTG ATGGTCAAAT GTGTCAGGTA GAGCACCTGC TGGGGCAGGA TAGCCTTTTT
GAAATGGGGC AAATACAGCC GTTGGAGCAA AGCTTTTGCA AACAGGTGAT CGACGCGGGT
CATGCTGAGG CGATCTACCG CATTAAAGGC AGCCTGCTTG AAGAGCATCC GGTACATACC
CAGTTTGGGG TGGAATCCTT TATCGGTACC CCACTCTACC TGGGTGATCG TTTTTATGGT
GCTTTGAGTT ACTACTCCAA GGTGCCACGC ACGAAGGGGT TTAGTTTTCA TGACCGCTCT
CTGATTAGCC TGCTGGCGCA ATGGGTGGGA TGGGAAAAAT ATCGTGCTCA GCAGCTCAAA
CAGTTAGAGC AGATTCACCA AGATTTGGAA AATGCCCAGA GCGTTGCCAA AATTGGTAGC
TGGCACTGGG ATATGCAGAA AGATAACCTG CATTGGTCGA AAGAGCTGGT GCGGTTATTA
GGGTTAGAAG GGGATACTTC CCACGCCTCC TACAGTACCT ATCTAGAGCT TATCCATCCT
GATGACCGTG CGAAGATTAA TCGGCAGATG GCTGCTGTTA CGCGGGGCAT GCAGGATCGG
TTTGAGGCAG ACCATCGAAT CATTTGCCAT AAGAGTGGCG AGTTACTGCA TATCCACGCC
CTAGGTATTG TGAGCCGCGA CAGCCGTGGT GTGCCCAGTC AGATGGTCGG TACGTTGCAG
GATGTCACGC GCCGTAAAAT GGCCGAAGAG GGGCTGGTGC TGGCAAAAAT GATTTTTGAT
AATGCGGGCG AAGCCATCGT TATTACCGAT GCTCAGGGGG ATATTACCGA CGTTAACCCC
GCGTACCAGC GTATTATGGG TTATACCCGT GATGAAATTG TGGGACAAAA TCCCAGCATT
CTTAAATCGG GCCGACATGA TGAGCAGTTT TATGAACAGA TGTGGAACGA GATGCTGAGT
GAAGGACACT GGCAGGGTGA AATTTGGGAT CGGCGTAAGA GTGGGGAGAT CTTTCCAAAA
TGGCTCACCA TTGATGCCAT TCGCGACGAG CAGGGCGTAA TCAGTAACTT TGTTGGTCTG
TTTATGGATA TTACCCAGCA AAAGGAGACC GAAGAGCAAC TGGAAAAACT GGCCTACTAT
GACCCCCTCA CCGAGCTACC CAATCGCGCG TTGTTTCGTG ACCGTTTGGA GCAGGAGATG
CGGCTATCTG CCCGTGGAGG AAAAAGTTTG GGGCTGTTTT TTATTGATTT GGATCGTTTT
AAATATGTGA ACGATAGCCT TGGTCACGAT AAAGGTGACG ATCTCCTTAT TCAGGTTGCT
GGGCGCATCA AACACCATTT ACGCACCAGT GATACGGTGG CTAGACTGGG GGGGGATGAG
TTTACGGTTA TTTTGCCGGG CATTGAGCAG ACCAATGATG TCGCCCGTAT TGCGGGGGCG
ATTGTCAAAT CCTTGGGTGA GGTGTTCGTG CTGCAAGGGC ACGAGGTGTT TATTGGGGGT
TCCATTGGTA TTGCCATGCA TCCCGATGAT GGTGAAGATT ATGAAACGCT GACCAAACAT
GCCGATACGG CGATGTATCG GGCAAAAGAG GAAGGGCGGG GTACTTATAA GTTTTTCACC
AGTGATATGA ACGAAATTAA TGGGCGACGG CTTAGCTTGG AGCGTGCCCT GCGGCAGGCG
GTGGAGTGTA ATCAGCTCAC TTTGCACTAT CAGCCCAAGG TGGATGTCAA ACAGTGTCGT
ATCACCGGTA TGGAGGCGCT GGTACGTTGG AACCATCCTG AACAGGGGCT GGTGTCGCCG
GTGGATTTTA TTCCCATTGC CGAAGAGACA GGGCTGATTA TTACCATTGG TGAATGGGTG
ATGCAGCAAG CCTGTATGGA CGCCAAACGC TTAGCAAGGT CGAGTCGCCA TCCCTTGCAG
GTGGCAATCA ACCTTTCGGC CAAACAGTTT CAGGACGCCT TGTTGGTGGC CAAATTGGAG
CGCTCTCTAC AGCAAAGCGG TCTTGCGCCA GAGTTGTTGG AGGTGGAGAT TACCGAGTCA
TTGGCCATGG GGGATGTCAA CCGCACCATT GAGCAGATCG GGGAGCTGCG GGCATTGGGG
GTAAAGGTCT CGATTGATGA TTTTGGCACC GGTTATAGCT CGTTGAGTTA CTTAAAAAAA
CTTCCCCTTA ATGCCTTAAA AATTGATAAA TCTTTTATTC AAGATCTCTA TCTGGACTCT
GACGATACCG CCATTGTCTC CTCTATTTTG AGCATGGCCA GTGCGTTGGG GTTGAGCGTG
GTGGCCGAAG GGGTGGAAAA CCAAGCGCAG ATTCACTTTT TGTGTGAAAA AGAGTGTCCC
ACCATTCAAG GATATTTCTT CAGCAAGCCG TTACCGTTTG AGGCGTTTGA AAAATTTTTG
CTGGATTGGG ATCCGGTAAA AATGAAGCAC TCCCTGGAGA AAATATAG
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| Protein sequence | MIVQQRGKWM QLSIARKVVY GFAVLIVLAL FSGLMVSSQL VVLQDRVARL QGQRVPLVVN
AVAFVSHVKD ALSALQSWMT TELPRFKQER QHAWQQARRQ LLKLEQILVT DPRLLEQLEP
LKEGLTQLGV LQDRIEALIE KPANKPAHQL YKEQLLPILE SLDVQVRRLV LRENHRPVFA
GGVAEAINSR TQLKELADLR SALSLCRSQL ERILTEPDDA LVQRFGQGLK QADGALAVLV
RADMSQTQRQ ELGQVQELWS EWPALAEQVI VLRQSDHWNL ARHLTGDALL PLWQTLRQRL
DTTVEQQLTT MVEEGRYLEQ SIALSRQVLF FSFVLLLVAG GLWAWWISHR LRSGFHTLLQ
RMSYVSDRIQ QADLTGNWSD CDLDICLIPN HQQDEIGAAV SAYNQLLTNL VVAQGNESRF
IDSLTRMHAI TVRTEWDSQR KIQEILEMGG EILEMESAIV THVDGQMCQV EHLLGQDSLF
EMGQIQPLEQ SFCKQVIDAG HAEAIYRIKG SLLEEHPVHT QFGVESFIGT PLYLGDRFYG
ALSYYSKVPR TKGFSFHDRS LISLLAQWVG WEKYRAQQLK QLEQIHQDLE NAQSVAKIGS
WHWDMQKDNL HWSKELVRLL GLEGDTSHAS YSTYLELIHP DDRAKINRQM AAVTRGMQDR
FEADHRIICH KSGELLHIHA LGIVSRDSRG VPSQMVGTLQ DVTRRKMAEE GLVLAKMIFD
NAGEAIVITD AQGDITDVNP AYQRIMGYTR DEIVGQNPSI LKSGRHDEQF YEQMWNEMLS
EGHWQGEIWD RRKSGEIFPK WLTIDAIRDE QGVISNFVGL FMDITQQKET EEQLEKLAYY
DPLTELPNRA LFRDRLEQEM RLSARGGKSL GLFFIDLDRF KYVNDSLGHD KGDDLLIQVA
GRIKHHLRTS DTVARLGGDE FTVILPGIEQ TNDVARIAGA IVKSLGEVFV LQGHEVFIGG
SIGIAMHPDD GEDYETLTKH ADTAMYRAKE EGRGTYKFFT SDMNEINGRR LSLERALRQA
VECNQLTLHY QPKVDVKQCR ITGMEALVRW NHPEQGLVSP VDFIPIAEET GLIITIGEWV
MQQACMDAKR LARSSRHPLQ VAINLSAKQF QDALLVAKLE RSLQQSGLAP ELLEVEITES
LAMGDVNRTI EQIGELRALG VKVSIDDFGT GYSSLSYLKK LPLNALKIDK SFIQDLYLDS
DDTAIVSSIL SMASALGLSV VAEGVENQAQ IHFLCEKECP TIQGYFFSKP LPFEAFEKFL
LDWDPVKMKH SLEKI
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