| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2222 |
|---|
| Symbol | |
|---|
| ID | 4481988 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 2831334 |
|---|
| End bp | 2834696 |
|---|
| Gene Length | 3363 bp |
|---|
| Protein Length | 1120 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639722971 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_866129 |
|---|
| Protein GI | 117925512 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.201183 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAGCT TTGCCCAACT GGCTATCCCC CAAGATCGTC CCGCCATTCT CCAAGCCATG
GCCCAAGCTT GGCAAAATCC AGGTCAGCCC GTGGAGGTTG AGTTTCATGT GGAAATTGGG
GAGATCTGGA CCAAAGTCAT CCGCTGCGTC ATGCAGAGCA CACCTCGTCC ATCCGGTTCA
CCCCAACGCC TGTTTGGTTC CGTGCAAAAC ATCACCCTGC TACGCAAAAT TGGCGATGCC
TTGGTTCACA GTGAAGAGCG CCTTAACCTT ATCCTAGAGG GTGCGCAAGA GGGGATGTGG
GAGTGGGATA TTGCCAGCGG AGCGCTCTAT TTTAGTTGCC ACTGGGAACG CATGCTCGGC
TTTGAGCCGG GTGAAATTCC CCACACCTAC CAAGCTTGGA TAACGCAAAT TCACCCTGAC
GATAAAACCG CCACCCTAGA GGCTCTGGAA CAGCACTTAC AGGGACACAC CCAACATTTT
GAAATTGAAC ACCGCCAGCA CACCAAAAAA GGCACATGGC TCTGGCTGCT CACCCGGGGT
AAAGTGGTAC AGTGGGGAGA TCAGCAGACC CCTTTGCGTA TGATGGGCAC CCAAATGAAC
GTCACCGACC GCATACGCGG TGAACAGGCC CTGCGCTTTG CTCACACCCA ACTCAAGCAG
CAAGAACGCC TTTTCCATGA CTATTTTGCC CACGGCGTGG TAGGCATGGC GATTACCACC
CCGGACCGCC TGTTTTTACA TGCCAACAAA CAACTTTGCG TGCTGCTGGA GTGCCAGCCT
AAGGCGCTGC TTAATACCCC CATTGATCAG TGGCTCGACC CCCGCCATCG TGATTATTAT
ATTGATCAAT ATGAGAGACT TGTACGACAC CTCACTGAAA ATTTTGAATT AGAGCTCCCC
CTCTGCACCG CGTTGGGTCG TCGGGTTTCG GTCAACCTCT CCACCCGTGC TTTATGGGAT
ACATCGGGAC GTATTACCCA CTGCATACAC ACCGCTGTGG ACCTAAGCGA ACATAATCAC
ATCATTGCCC AAGTAAAGGA GAGTGAAAAA AGGTTCCGCG CCATTTTTGA GCACGCAGGC
TTGGCCGTGG CACAAGGGGA TATCCATGGT ACCATTATAA AAGTAAACAG CGCGTACGCT
AACTTGCTGG GCTACAGCCC AGACGAACTG GTAGGGCGCT CATTACAGTC GCTCACACAC
CCCAGCGATT TTCCTGAAAA TTTATCTTTA TTGCATGATC TGGCTAAAAA AAAGCGCAGT
GTGTATACCC TTGAAAAACG GATTCTCCAT AAAGATGGTA GTTGGATATG GGTTGAGAGT
ACCGTCACAG CTCTGACCAA CGCCATGGAT GAGCCTGAAT TTTTGATTAA TATGACGAGG
GATATTACCG ATCGGCGGCG GGCTGAGGCC GCTCTGGTAG AAAGCGAACA GCGTTATCGG
CAACTTTTTC AACGCAATAA AGCGGTTGAG CTGTTAATTG ATCCCGTTAA CGGCCAAATC
GTCGATGCCA ACATGGCCGC GGCAGACTAT TATGGCTACA GTTGCGATAC CTTACGCCAA
ATGAACATCG CGCAGATCAA CATTCTCACA CGGGACGAAA TTGAGCAGGA AATGCTGCGG
GCCGAGCAGG AAAATCGCAA CCATTTCCAG TTCCGCCATC GCCTTAGCAG CGGTGAGGTG
CGTGATGTTG AAATTCACTC GGGACCGGTG GAGATCCAAG GACGTGCCCT ACTTTATTCG
ATTGTACATG ACATTACCGA GCGGCGGCGT ATTGAAGCGG CATTAAGCCA CAACCGACAT
CAGCTCGAAG CCTCCCATGG GCGTCTTATT ACGATTTTGG ATAGTTTACA ATCAATTGTC
TATGTCGCCG ACCCGCAAAC TGGAGAGATA CTCTACCACA ACCGATATTT ATTCGATATT
GCGGGTAATT TGAAAGGGGA ACGTGAGGAG CTGCTCTACC CAAACAAAAA GCGTCTCTCG
CAAGGCACAC CAGCTTCCCG CAGCCGGGGC CGCAACCATG CTCAGAGCTG GGAGTATTGC
AGCCCCATCA ACCACCGTTG GTACTCGGCC CACTCCCAGC CCATCACCTG GGTGGATGGC
CGCACCGTGC GGCTAGAGGT CGCCACGGAT ATCAACTCCC TGAAACAGAG CGAGCAGGCG
CTGTTGCAAG CCAAAGAGTT GGCGGAGAGT GCCAACCGAG CCAAAAGCGA TTTTTTGGCC
ACCATGAGCC ATGACATCCG CACCCCCATG AACGCGGTAT TGGGTATGGT CGAGCTGTTG
GGTGAATCTT CCCTGGACCC AGAGCAGAGC CATTATCTGA AAATTATTCG CCGCGCGGGT
TCTACCCTAC TCTCACTCAT CAATGACATT TTAGATCTTT CCAAAATCGA AGCGGGGCAG
CTTAAATTGG AGTTGGACGA CTTCACCTTG GCAGAAACGG TGGAGCATGT GATGGACATT
CTGCGTCATA AGGCCAGTGA AAAGGGGTTG CAACTCCAAA CCCATCTGCA CATCCCCCCG
CAACAAAGGG TGCGGGGGGA TGCCCAACGC TTACGTCAGA TTTTACTTAA TTTACTAGGT
AATGCCGTTA AATTTACCCA GCAGGGCAGT GTCTCCCTAA CCTTACAGCA ACAACCTGAT
GGCCAATACT CTTTCCAAGT AGCCGACACG GGGCCAGGGA TCGCCCCCCA CCGGCAGAAG
ATCATTTTTG AACCCTTTGT CCAAGAAGAG AGTGGCACCC ATCGCCATTT TGGCGGCAGT
GGCTTGGGTT TAAGCATCTG CCATAAACTG GTGACGGCCA TGCGGGGCAC ACTTTGGCTA
AAGAGCCAAT TGGGTCATGG CAGCATTTTT TACTTCACCC TTCCCCTCGC TACGGCTATG
GAGCCAGCCC CCGACGAAGT TTCACCGCAG AGCGTTTTAC ACGCACCTGT GAGCCTTACG
CAACTGGTAA ACAAGCGTTT ACTGGTGGTG GATGATGCCG AGGATAACCG TAATTTAATT
CAAGCTTTTT TAAAGAGTTG TCAAATGCAG ATCCAGATGG CCGAAGATGG TGAGCAAGCC
GTACGTCTGT GCCAAGAGCA ACGCTTTGAC CTGATTTTGA TGGATATACA GATGCCTATC
ATGAATGGGC TCGAAGCAAC CCGCTTGATC CGCCAGCATG AGCAAATGCA GCATAAATCC
CGCACCCCCA TTATTGCCCT CAGTGCCCAT GCCATGCTTG ATGTTAACAA TGATGCCTTG
GCGGCTGGTT GCGACCTGCA TTTATCTAAA CCCATTGCCA AAAAACGGCT ACTGGAAGCG
CTCTGTCATC AACTGTGTCC CGTTGTACCT ACCCATAATG ATGATGCGCC ACCCCTCCCT
TAG
|
|---|
| Protein sequence | MESFAQLAIP QDRPAILQAM AQAWQNPGQP VEVEFHVEIG EIWTKVIRCV MQSTPRPSGS
PQRLFGSVQN ITLLRKIGDA LVHSEERLNL ILEGAQEGMW EWDIASGALY FSCHWERMLG
FEPGEIPHTY QAWITQIHPD DKTATLEALE QHLQGHTQHF EIEHRQHTKK GTWLWLLTRG
KVVQWGDQQT PLRMMGTQMN VTDRIRGEQA LRFAHTQLKQ QERLFHDYFA HGVVGMAITT
PDRLFLHANK QLCVLLECQP KALLNTPIDQ WLDPRHRDYY IDQYERLVRH LTENFELELP
LCTALGRRVS VNLSTRALWD TSGRITHCIH TAVDLSEHNH IIAQVKESEK RFRAIFEHAG
LAVAQGDIHG TIIKVNSAYA NLLGYSPDEL VGRSLQSLTH PSDFPENLSL LHDLAKKKRS
VYTLEKRILH KDGSWIWVES TVTALTNAMD EPEFLINMTR DITDRRRAEA ALVESEQRYR
QLFQRNKAVE LLIDPVNGQI VDANMAAADY YGYSCDTLRQ MNIAQINILT RDEIEQEMLR
AEQENRNHFQ FRHRLSSGEV RDVEIHSGPV EIQGRALLYS IVHDITERRR IEAALSHNRH
QLEASHGRLI TILDSLQSIV YVADPQTGEI LYHNRYLFDI AGNLKGEREE LLYPNKKRLS
QGTPASRSRG RNHAQSWEYC SPINHRWYSA HSQPITWVDG RTVRLEVATD INSLKQSEQA
LLQAKELAES ANRAKSDFLA TMSHDIRTPM NAVLGMVELL GESSLDPEQS HYLKIIRRAG
STLLSLINDI LDLSKIEAGQ LKLELDDFTL AETVEHVMDI LRHKASEKGL QLQTHLHIPP
QQRVRGDAQR LRQILLNLLG NAVKFTQQGS VSLTLQQQPD GQYSFQVADT GPGIAPHRQK
IIFEPFVQEE SGTHRHFGGS GLGLSICHKL VTAMRGTLWL KSQLGHGSIF YFTLPLATAM
EPAPDEVSPQ SVLHAPVSLT QLVNKRLLVV DDAEDNRNLI QAFLKSCQMQ IQMAEDGEQA
VRLCQEQRFD LILMDIQMPI MNGLEATRLI RQHEQMQHKS RTPIIALSAH AMLDVNNDAL
AAGCDLHLSK PIAKKRLLEA LCHQLCPVVP THNDDAPPLP
|
|---|
| |