Gene Mmc1_2220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_2220 
Symbol 
ID4481983 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp2826798 
End bp2829713 
Gene Length2916 bp 
Protein Length971 aa 
Translation table11 
GC content50% 
IMG OID639722966 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_866127 
Protein GI117925510 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00060546 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0976665 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTTTC AATATGGTGA CAAAATATTA TTTAAACATA TAACCATACA TAATCGCATG 
CTGGTCATGG TTGGTTGCGC CATCATTTCC CTTATGTTTG TGGGTGGTTT TGGTTTGCGA
GAGCTGCATA GCAATCTGAT GCAAGATCGT AAAAATAAAA CGCAACATCT GGTCCAAGTC
GTGGTCTCTA CGCTGGCGGC GTATCAAGCG CAGGTGGTTG CCGGAACCCT GTCGTTGAGG
GATGCTCAGC AGCAAGCCGC AGATATGGTT GCCCATATGC GCTACGGGCA AGAAAATTAT
TTTTGGATCA ATGATTTAAA TATAAAAATG GTTGTTCACC CTCTGCGGCC AGAGCTAAAT
GGTCAAGATC TTTCCACCAT AAAAGATGCC AATGGCGTGT TTTTGTTTAC CCGCTTTGTG
GATGTAGTAC AGCGCCAGGG TAGTGGTTTT GTGGAGTATT TATGGCCCAA GCCAGGGTCC
ATAGAAGCCG TACCCAAAAT TTCTTATGTC GAAAAATTTG CGCCCTGGGG GTGGATGGTT
GGCTCAGGGA TCTATGTTGA TGATGTAGAA CATATTTTCC AAGATGCGGC CAGTGCTTTT
ATGGCGGTCA TTTTAACCGC GCTACTGGTT GTTTGGGCCA TTTCGGTAAA GATTGGCCGT
AGCATTACGC GACCTCTCTT CCAAACCCGC CAAGCGATGT TGCGCTTGGC CAATGGCGAC
TTGGATGTGC CCCTTGAGGA TATGGACCGT TCCGAGTTGG GGGATCTTAG TCAGGCTCTG
CGTGTTTTTA GGGATCAATT TGCCATTAAC GAAGGGCTGC GCCTAGAGCG GGAGGAGAGC
CTAAAACAGG CTGCCGAAAA ACGCGAAGAG TTGGCACGTA TCATTGAAAT AAGCCACACG
GTGGTGCTCT CTTGGGAGAA TGATGAAGAG TGGTCCCTGA GCTATGTATC AGAAAATTGT
TATCGGATTT TGCAATCTGG GCTTAAATCA TTGGTGTTAA AACCGCTGGT TAATCCTGAA
GACCTCCCTC AGATGGAGGC CCTGTTGGCT GCGGGTGGGG ATGCGTCTCG TTGGGTCAAG
TTAGAGTTTC GCTTGTGCTT GGGCAGTGAA GAACCCCGAT GGTTTGAGTG CTGCGTGCTC
CCCATCAAAG ATGATCATGC AGAGGTTGTT CAATACCATG GCGTTTTACA CGATATAACC
GAGCGCCGCA AAGGGGAGCA TGATCTGCGG TTGGCCCAGG TGTTGTTCCG CACGACCAAT
GAGGCGTTGA TGATCTCGTC GCGGGATAAC AAGATAGAGA TGGTTAACCC AGCTTTTAGC
CGTATTACCG GCTATCAACT TGATGAGGTG CTAGGCAAGG GTCCTGACTT GTTGCAATCG
GGCCGACACG ATGCGCCATT CTATACACAG ATGTGGCACG CTTTGCAGCA GGATGGTGCG
TGGGAGGGGG AGATCTGGAA CCGACGTAAA AGCGGTGAAA CCTATCCTGA ATGGCTCTCC
ATCGCGACGG TGACGAATGA CAAGGGCGAG ACGGTGCAAT ATGTCGCGGC CTTTAGTGAC
ATTACCAAAC GGAAACAGGC GGAAGAGACC ATTCTTCACC AAGCCAATTA TGATTTTTTG
ACTGACCTGC CCAACCGTAA CCTTTTTCAC GACCGTCTGC AAACGGAGCT GAAACGGTCC
CAACGTTCTG GGCAGCAGGT GGCGCTGCTG TTTATTGATC TCGACCGCTT TAAGTTTGTT
AATGATACGC TGGGTCATAA TGTTGGGGAT CAATTGCTGC GCGAAGTGGC GATCCGTTTG
GGGCACTGCG TGCGTGAGTC GGATACCATT GCCCGGTTGG GTGGGGATGA GTTCACGGTG
ATACTGCCCG AGCTGCACGG TCCCGAAGGG GTGGCACGGC TGGCGCAGGG TATGATTGAT
AAGTTGGAAG AGCGCTATTG TATCCAGGAT CATGAGCTGT TTATTTCGGC CAGCATCGGC
ATTACCATTT ATCCGGAGGA TGCGGATAAT ATGATGGATC TGGTAAAAAA TGCGGATGTC
GCCATGTATC GCGCCAAGGA GAATGGACGG GGCAGCTTTT GTTTCTACAC CGCTGAGATG
AATGCGGATG CAAGACAGTT GCATAAGATT GAACAAGCGT TGCGGGTTGC TTTGGAAGAG
GGGCAGTTTT GGATCCACTA TCAGCCCTAT GTGCAGCAAT CCAGTGGGTT GATAACCGGG
GTTGAGGCGC TGATTAGGTG GCGCAATAGT GCGGGGGAGA TTGTCTATCC GGATCAATTT
ATTCCCGTAG CTGAAGAGAC GGGTTTGATT GTGCCCATTG GATTATGGGT GTTGCGCAGC
GTTATTGGGG TTATTGCACA ATGGCAGCGT GAGGGGCATC CAGACATTAC CTTTTCGGTA
AACGTCTCGG CGCGGCAGTT TCAAGAGGGG CACTTGGTCG GTCAAATTAA GGCTGCCTTG
CAGGAGAATC AGATCAATCC CCAGAGCTTG ATGTTGGAGA TCACGGAAAG CCTCATGATC
CGTGACCCAG AGCATACATT AAACATGCTT AAAGAGATTA AGGCGTTGGG TGTTCGGGTG
GCGCTGGATG ATTTTGGCAC GGGTTATTCT TCCTTGGGTT ATCTTAAGCA ATTTCCCATT
GATTTGCTCA AGATAGACCG CTCCTTTATC AATGGTATTG CCAACAGTCA GGATGATGAG
ACCATGGTAT CTGCCATTGT CAGCATGGCG CACAGTCTGG GTGTTGGGGT GATTGGAGAG
GGGATTGAAA ATGACCAGCA ATTGCAGCGG GTCAATCTTC ATGCCTGTGA TTATGTTCAG
GGATTTTTTT ACAGTAGACC CATGCCGTAT GATGAATTGG CGCTGTTTTT TGAAGGGTAT
CAAAAGAGTC ACCTGGGGCT AGCGGAGTCG GAGTAG
 
Protein sequence
MDFQYGDKIL FKHITIHNRM LVMVGCAIIS LMFVGGFGLR ELHSNLMQDR KNKTQHLVQV 
VVSTLAAYQA QVVAGTLSLR DAQQQAADMV AHMRYGQENY FWINDLNIKM VVHPLRPELN
GQDLSTIKDA NGVFLFTRFV DVVQRQGSGF VEYLWPKPGS IEAVPKISYV EKFAPWGWMV
GSGIYVDDVE HIFQDAASAF MAVILTALLV VWAISVKIGR SITRPLFQTR QAMLRLANGD
LDVPLEDMDR SELGDLSQAL RVFRDQFAIN EGLRLEREES LKQAAEKREE LARIIEISHT
VVLSWENDEE WSLSYVSENC YRILQSGLKS LVLKPLVNPE DLPQMEALLA AGGDASRWVK
LEFRLCLGSE EPRWFECCVL PIKDDHAEVV QYHGVLHDIT ERRKGEHDLR LAQVLFRTTN
EALMISSRDN KIEMVNPAFS RITGYQLDEV LGKGPDLLQS GRHDAPFYTQ MWHALQQDGA
WEGEIWNRRK SGETYPEWLS IATVTNDKGE TVQYVAAFSD ITKRKQAEET ILHQANYDFL
TDLPNRNLFH DRLQTELKRS QRSGQQVALL FIDLDRFKFV NDTLGHNVGD QLLREVAIRL
GHCVRESDTI ARLGGDEFTV ILPELHGPEG VARLAQGMID KLEERYCIQD HELFISASIG
ITIYPEDADN MMDLVKNADV AMYRAKENGR GSFCFYTAEM NADARQLHKI EQALRVALEE
GQFWIHYQPY VQQSSGLITG VEALIRWRNS AGEIVYPDQF IPVAEETGLI VPIGLWVLRS
VIGVIAQWQR EGHPDITFSV NVSARQFQEG HLVGQIKAAL QENQINPQSL MLEITESLMI
RDPEHTLNML KEIKALGVRV ALDDFGTGYS SLGYLKQFPI DLLKIDRSFI NGIANSQDDE
TMVSAIVSMA HSLGVGVIGE GIENDQQLQR VNLHACDYVQ GFFYSRPMPY DELALFFEGY
QKSHLGLAES E