Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_2220 |
Symbol | |
ID | 4481983 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 2826798 |
End bp | 2829713 |
Gene Length | 2916 bp |
Protein Length | 971 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639722966 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_866127 |
Protein GI | 117925510 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00060546 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0976665 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTTC AATATGGTGA CAAAATATTA TTTAAACATA TAACCATACA TAATCGCATG CTGGTCATGG TTGGTTGCGC CATCATTTCC CTTATGTTTG TGGGTGGTTT TGGTTTGCGA GAGCTGCATA GCAATCTGAT GCAAGATCGT AAAAATAAAA CGCAACATCT GGTCCAAGTC GTGGTCTCTA CGCTGGCGGC GTATCAAGCG CAGGTGGTTG CCGGAACCCT GTCGTTGAGG GATGCTCAGC AGCAAGCCGC AGATATGGTT GCCCATATGC GCTACGGGCA AGAAAATTAT TTTTGGATCA ATGATTTAAA TATAAAAATG GTTGTTCACC CTCTGCGGCC AGAGCTAAAT GGTCAAGATC TTTCCACCAT AAAAGATGCC AATGGCGTGT TTTTGTTTAC CCGCTTTGTG GATGTAGTAC AGCGCCAGGG TAGTGGTTTT GTGGAGTATT TATGGCCCAA GCCAGGGTCC ATAGAAGCCG TACCCAAAAT TTCTTATGTC GAAAAATTTG CGCCCTGGGG GTGGATGGTT GGCTCAGGGA TCTATGTTGA TGATGTAGAA CATATTTTCC AAGATGCGGC CAGTGCTTTT ATGGCGGTCA TTTTAACCGC GCTACTGGTT GTTTGGGCCA TTTCGGTAAA GATTGGCCGT AGCATTACGC GACCTCTCTT CCAAACCCGC CAAGCGATGT TGCGCTTGGC CAATGGCGAC TTGGATGTGC CCCTTGAGGA TATGGACCGT TCCGAGTTGG GGGATCTTAG TCAGGCTCTG CGTGTTTTTA GGGATCAATT TGCCATTAAC GAAGGGCTGC GCCTAGAGCG GGAGGAGAGC CTAAAACAGG CTGCCGAAAA ACGCGAAGAG TTGGCACGTA TCATTGAAAT AAGCCACACG GTGGTGCTCT CTTGGGAGAA TGATGAAGAG TGGTCCCTGA GCTATGTATC AGAAAATTGT TATCGGATTT TGCAATCTGG GCTTAAATCA TTGGTGTTAA AACCGCTGGT TAATCCTGAA GACCTCCCTC AGATGGAGGC CCTGTTGGCT GCGGGTGGGG ATGCGTCTCG TTGGGTCAAG TTAGAGTTTC GCTTGTGCTT GGGCAGTGAA GAACCCCGAT GGTTTGAGTG CTGCGTGCTC CCCATCAAAG ATGATCATGC AGAGGTTGTT CAATACCATG GCGTTTTACA CGATATAACC GAGCGCCGCA AAGGGGAGCA TGATCTGCGG TTGGCCCAGG TGTTGTTCCG CACGACCAAT GAGGCGTTGA TGATCTCGTC GCGGGATAAC AAGATAGAGA TGGTTAACCC AGCTTTTAGC CGTATTACCG GCTATCAACT TGATGAGGTG CTAGGCAAGG GTCCTGACTT GTTGCAATCG GGCCGACACG ATGCGCCATT CTATACACAG ATGTGGCACG CTTTGCAGCA GGATGGTGCG TGGGAGGGGG AGATCTGGAA CCGACGTAAA AGCGGTGAAA CCTATCCTGA ATGGCTCTCC ATCGCGACGG TGACGAATGA CAAGGGCGAG ACGGTGCAAT ATGTCGCGGC CTTTAGTGAC ATTACCAAAC GGAAACAGGC GGAAGAGACC ATTCTTCACC AAGCCAATTA TGATTTTTTG ACTGACCTGC CCAACCGTAA CCTTTTTCAC GACCGTCTGC AAACGGAGCT GAAACGGTCC CAACGTTCTG GGCAGCAGGT GGCGCTGCTG TTTATTGATC TCGACCGCTT TAAGTTTGTT AATGATACGC TGGGTCATAA TGTTGGGGAT CAATTGCTGC GCGAAGTGGC GATCCGTTTG GGGCACTGCG TGCGTGAGTC GGATACCATT GCCCGGTTGG GTGGGGATGA GTTCACGGTG ATACTGCCCG AGCTGCACGG TCCCGAAGGG GTGGCACGGC TGGCGCAGGG TATGATTGAT AAGTTGGAAG AGCGCTATTG TATCCAGGAT CATGAGCTGT TTATTTCGGC CAGCATCGGC ATTACCATTT ATCCGGAGGA TGCGGATAAT ATGATGGATC TGGTAAAAAA TGCGGATGTC GCCATGTATC GCGCCAAGGA GAATGGACGG GGCAGCTTTT GTTTCTACAC CGCTGAGATG AATGCGGATG CAAGACAGTT GCATAAGATT GAACAAGCGT TGCGGGTTGC TTTGGAAGAG GGGCAGTTTT GGATCCACTA TCAGCCCTAT GTGCAGCAAT CCAGTGGGTT GATAACCGGG GTTGAGGCGC TGATTAGGTG GCGCAATAGT GCGGGGGAGA TTGTCTATCC GGATCAATTT ATTCCCGTAG CTGAAGAGAC GGGTTTGATT GTGCCCATTG GATTATGGGT GTTGCGCAGC GTTATTGGGG TTATTGCACA ATGGCAGCGT GAGGGGCATC CAGACATTAC CTTTTCGGTA AACGTCTCGG CGCGGCAGTT TCAAGAGGGG CACTTGGTCG GTCAAATTAA GGCTGCCTTG CAGGAGAATC AGATCAATCC CCAGAGCTTG ATGTTGGAGA TCACGGAAAG CCTCATGATC CGTGACCCAG AGCATACATT AAACATGCTT AAAGAGATTA AGGCGTTGGG TGTTCGGGTG GCGCTGGATG ATTTTGGCAC GGGTTATTCT TCCTTGGGTT ATCTTAAGCA ATTTCCCATT GATTTGCTCA AGATAGACCG CTCCTTTATC AATGGTATTG CCAACAGTCA GGATGATGAG ACCATGGTAT CTGCCATTGT CAGCATGGCG CACAGTCTGG GTGTTGGGGT GATTGGAGAG GGGATTGAAA ATGACCAGCA ATTGCAGCGG GTCAATCTTC ATGCCTGTGA TTATGTTCAG GGATTTTTTT ACAGTAGACC CATGCCGTAT GATGAATTGG CGCTGTTTTT TGAAGGGTAT CAAAAGAGTC ACCTGGGGCT AGCGGAGTCG GAGTAG
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Protein sequence | MDFQYGDKIL FKHITIHNRM LVMVGCAIIS LMFVGGFGLR ELHSNLMQDR KNKTQHLVQV VVSTLAAYQA QVVAGTLSLR DAQQQAADMV AHMRYGQENY FWINDLNIKM VVHPLRPELN GQDLSTIKDA NGVFLFTRFV DVVQRQGSGF VEYLWPKPGS IEAVPKISYV EKFAPWGWMV GSGIYVDDVE HIFQDAASAF MAVILTALLV VWAISVKIGR SITRPLFQTR QAMLRLANGD LDVPLEDMDR SELGDLSQAL RVFRDQFAIN EGLRLEREES LKQAAEKREE LARIIEISHT VVLSWENDEE WSLSYVSENC YRILQSGLKS LVLKPLVNPE DLPQMEALLA AGGDASRWVK LEFRLCLGSE EPRWFECCVL PIKDDHAEVV QYHGVLHDIT ERRKGEHDLR LAQVLFRTTN EALMISSRDN KIEMVNPAFS RITGYQLDEV LGKGPDLLQS GRHDAPFYTQ MWHALQQDGA WEGEIWNRRK SGETYPEWLS IATVTNDKGE TVQYVAAFSD ITKRKQAEET ILHQANYDFL TDLPNRNLFH DRLQTELKRS QRSGQQVALL FIDLDRFKFV NDTLGHNVGD QLLREVAIRL GHCVRESDTI ARLGGDEFTV ILPELHGPEG VARLAQGMID KLEERYCIQD HELFISASIG ITIYPEDADN MMDLVKNADV AMYRAKENGR GSFCFYTAEM NADARQLHKI EQALRVALEE GQFWIHYQPY VQQSSGLITG VEALIRWRNS AGEIVYPDQF IPVAEETGLI VPIGLWVLRS VIGVIAQWQR EGHPDITFSV NVSARQFQEG HLVGQIKAAL QENQINPQSL MLEITESLMI RDPEHTLNML KEIKALGVRV ALDDFGTGYS SLGYLKQFPI DLLKIDRSFI NGIANSQDDE TMVSAIVSMA HSLGVGVIGE GIENDQQLQR VNLHACDYVQ GFFYSRPMPY DELALFFEGY QKSHLGLAES E
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