| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2180 |
|---|
| Symbol | |
|---|
| ID | 4483013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 2732270 |
|---|
| End bp | 2734894 |
|---|
| Gene Length | 2625 bp |
|---|
| Protein Length | 874 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639722924 |
|---|
| Product | TolC family type I secretion outer membrane protein |
|---|
| Protein accession | YP_866087 |
|---|
| Protein GI | 117925470 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000461522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.954774 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATGT TTATCTGTAG AGCGATCTTA TTGTTATGTT TTTTTGGTTT GCTCTCGGTT
GTGCAACCAA GTTGGGCAGA AAACCTGCCT GTTCGCAAAT TGGCTTTACT GGGTGAGGCC
AGCACCGTGC GGTTCCAGGT GGATGCCGGT ATGGGGGTCA TTACACAGGG TGAGTTGATC
GACCATGGTT ATGGTTTGCG GGTGCGCCTC AAAGGGGTTA CGCAACCCAT GTTGGAGCAA
CTGGTCGCGC GTTTAACCAT GGATAACCCG CTGGTTAAGT CCATCGACAT CGCGGTGGAT
GAGGCCGCAG ACGAGGGGCT CCTTACCCTG GTGCTGATGG AAAAGGTGGC CGTGCTGGAT
GAAACCTTGG TGGCGCTGGA TGATGAACTC TCCCGCTGGG AGGTTGTGCT TACCACTGAC
CTGCCCCAGG AGGTGCTCAA TCTCGATGAA AAGCTGCCCG CTCCGGTTCT GCACAAAGTG
AGGTTGCTTA ATCGCAGTGG TTTGCTCACG GTGGTGTTGG AGGGCAATGC GGCCATTGTG
GCAGAAGCCT CATTTCGTGC CGATCCTCCC CGACTGATCT TGGATCTGCC CAAAGTGCCT
ATGGGTGAGT TAGAGACGGC CATTCAAGCC TATAACCACA ATCCAGATCA ACCCTTGGTG
CGCGCCATCC GCAGTAAACA AGACACCCCT GGTGTGGGAC GCCTGGTATT TGACCTTAAT
CAGCCATTGG ATTTGGTGGA GAGCCTTGGC CGTGTCGAGG GTGAGCGGGG CACCATTGTC
ATAGGCTTGG TGCCCGATGG TGGATCAGCG GGTGCTAGCC AAGCGCAAAG TGGCGCTGTG
GGGGGTAAGT TGAGCAGTGT TGAACTGCGG CAGCAGGGGC GGCGTCTTTC GCTGTTTTTA
AATGGTACCA CCGGTACCGA AGTAAGCGCT TATGCGCTGC AAAATCCCCC CCGTATCCGT
ATGGATTTAA TCGGCTGGCG TCCTGAACAG GTGGTGGATG CGGTGGCCGC TTTTCAAACC
AACCACCCCT TAATTCGCGC CATCCGCTAT GGTGAATCAA GGCTGGGTTC AGCCCGGGTA
GAGTTTGAGC TGGCGCAGTC GGTGCAGTTG TTGGATGCCG CAGTACGCAA AAGCTTTGAT
AATATGCATG AAAATTTTGT CGTGTCGGTT TTATCGCCCA AAGATCTCCT GCCGGGCAGC
GCGTTGACGG CGCTACCGTT GGATCGCCGC TTGGTGCCTG ATTTTGACTT TACGGAAAAC
CCGGAAATCA TGATCAGCCC GGTGCAGTTG AGTAAGAACT TGACAGGCCC TTCATTGGAT
TTGCAAGAGG CACCCGCCCC CGAAGAGCCT GGGGTCACAC TCAATTTGTT GGATTTTTAT
CAACAAGCTC TGGTGCGGGA TGCCCAGTAC CAAGCGGCAA CATCGCTTTA CCGCTCTAAA
TTAGAGGCCT TCCCCAAAGC TCGCGCCGGC TACCTGCCCA GCGCTTCTCT TTCGATTGTG
GCCAATCGGG TTCACTCCCT GATTAAACGT CAGCAGCTCA GTACCTCGCC CGTTGGACCC
ATTAATTATG ACGACCGTAG TTACACCCTG ACCATTACCC AGCCCATTAT TCAAGTGCCG
GTCATTGTGC AGATGAGCCA AGCCCGTGTT ACGGAAGAGC AGGCTAAGGT GGACCTCATC
AAAGAGGAGC AGGATCTTAT TCTCAGGGTT GCGCAAAATT ATCTAAATTT ACTGGCTTCC
AAGGACTCTT TGGAGATGTC CAAGGCGGAA CATGAGACCA CCAGCAAGCA TCTTGAGCAG
GCGCAAACCC AGGAGCGTAG CGGTTTGGCC ACCCGTACCG ATGTTGCAAC GGCGGAGGGG
CGTGCGGCGT TGGCCGAGGC TGAGGTGATT GCCGCACAAA ATCGCATGGA AGACGCCAAA
TATGCCCTCA AGGAGATTGT GGGAGAAAAG GTGGACGCAG TGCACGGGTT CCAGGGGGAT
TTTGATCCTG CGCCACCCCA ACCTGCCAAC ATGGACGCTT GGTTAGAGGC CGCGCTGAAA
CAAAATCTCA CGTTACAATC GGTCCGTCTA GCCCAACGTA TTCAGCAGTT GGAGGTCAAG
CGCTTGCAGG CTGGCTACAT CCCCACCTTG ACCTTAAAAG GGGAGCATGT TGGTTCATCG
GCCAGCGGTT CAATTTTTGG TCCTGGGGCT AAAACCTATG ACAGCACCAT CGGGGTCACC
ATGGATATGA ACCTGCTGGA GGGGGGGTTA ACCATGGCCC AGGTGCGCGA AGCTAAGGCA
TTGGAAGCCC AAGCCCGCCA GCAAGCCGAG CAAAATTTTC GCCAAGTTGA GCGTCAAACT
CGTTCGGCTT ATCGCCAGGT GGAGTCCAGT TCAAGGCTAT TGGGGGCGCT GCGTAAACAG
GTTATTGCCA ATGCCACCTC GCTCCAGTCC AAGCTCGCGG GTTATGCGTC AGGGGTAGAA
AATGTGTTGT CGGTATTGGA TGCCTACAAA CTCTACTACA CCTCACGTCG GGAATATTTG
GCTCAGCGTT ATGAGTATTT GGTAAACCGT CTACGGTTAA AACAGGCGGT AGGGGCGTTA
AGTCAGGATG ATCTGGAGAG TTTGGCAGCC CTGCTGGACC GTTGA
|
|---|
| Protein sequence | MPMFICRAIL LLCFFGLLSV VQPSWAENLP VRKLALLGEA STVRFQVDAG MGVITQGELI
DHGYGLRVRL KGVTQPMLEQ LVARLTMDNP LVKSIDIAVD EAADEGLLTL VLMEKVAVLD
ETLVALDDEL SRWEVVLTTD LPQEVLNLDE KLPAPVLHKV RLLNRSGLLT VVLEGNAAIV
AEASFRADPP RLILDLPKVP MGELETAIQA YNHNPDQPLV RAIRSKQDTP GVGRLVFDLN
QPLDLVESLG RVEGERGTIV IGLVPDGGSA GASQAQSGAV GGKLSSVELR QQGRRLSLFL
NGTTGTEVSA YALQNPPRIR MDLIGWRPEQ VVDAVAAFQT NHPLIRAIRY GESRLGSARV
EFELAQSVQL LDAAVRKSFD NMHENFVVSV LSPKDLLPGS ALTALPLDRR LVPDFDFTEN
PEIMISPVQL SKNLTGPSLD LQEAPAPEEP GVTLNLLDFY QQALVRDAQY QAATSLYRSK
LEAFPKARAG YLPSASLSIV ANRVHSLIKR QQLSTSPVGP INYDDRSYTL TITQPIIQVP
VIVQMSQARV TEEQAKVDLI KEEQDLILRV AQNYLNLLAS KDSLEMSKAE HETTSKHLEQ
AQTQERSGLA TRTDVATAEG RAALAEAEVI AAQNRMEDAK YALKEIVGEK VDAVHGFQGD
FDPAPPQPAN MDAWLEAALK QNLTLQSVRL AQRIQQLEVK RLQAGYIPTL TLKGEHVGSS
ASGSIFGPGA KTYDSTIGVT MDMNLLEGGL TMAQVREAKA LEAQARQQAE QNFRQVERQT
RSAYRQVESS SRLLGALRKQ VIANATSLQS KLAGYASGVE NVLSVLDAYK LYYTSRREYL
AQRYEYLVNR LRLKQAVGAL SQDDLESLAA LLDR
|
|---|
| |