| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2173 |
|---|
| Symbol | |
|---|
| ID | 4483006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 2677797 |
|---|
| End bp | 2679875 |
|---|
| Gene Length | 2079 bp |
|---|
| Protein Length | 692 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639722917 |
|---|
| Product | polypeptide-transport-associated domain-containing protein |
|---|
| Protein accession | YP_866080 |
|---|
| Protein GI | 117925463 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2831] Hemolysin activation/secretion protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0036053 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.421945 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTGC CAGCGACACC GCCGCGCCCC ATGTATCGAC ATCCCTTATG TCACGCCACC
CTTGTGTTGG GTGCGACCGT GCTGCTGACC GTGCCAGATG CCTTGGCGGT TCCCACCAAT
GAAGAGGCTA AGCGCCTCAT GGATGGCATT AGCCGGGAAC AGGCCCTGCA TATTCCTGCG
ATGCAAAAAC TGCCCAAGCT GGGTGAGCGT ACCATCATAC GCGCCAATAT GCCCCGCCAG
CGCACCTCTT TGAACAGCCT TAAATTGACC GTGGATGGTT TTCGCTTAGA GGGACACCCT
GGTGTAGATT CCGCAGCGGT GGATGAGGTG ATCACCCCCT GGAAAGGTCG GGAGCTAACC
TTTGCCGAAT TTGAGCAGAT GGTTCACGCC GTGGCGGCAT TTTTGCGAGA GAATGGACAT
CCTGACGCGC AAGTGATGAT CTCTCGGGCC AATATTAAAA ATCGCAAAAT GTCGGTGGCG
GTGCGGGGTT TGACGCCGGC CTCGGTCTTT TTAGCCAAAC AGGTACCCGT CAAGGTGGAG
CCCCGCATTT TTGTGGACCG CTTTGAAGTG ACCGGTTTAA CCCTGTTGGA CGAGGAGGAG
CTTACCCAAG CACTGGAGCC CTACAGCGGT CGCTATTTGA CCGGTACCCA GATGCAGGAG
GCCGCCGATG CCATTGCCAA TGTGCTACGG GGTAAAGGTT ACAAGGTTGC GCAAGCCTTT
ATGCCGCCCC AGCGGGCAGA TAGCGGTATT TTAAAAATTG AGGTGCTCGA AGGGGTGGTG
GATCCAGCCA GTGGGGTGAA TGGCATTGTG GTAACTGGGG CGGGTAAGCG TATTCGTGAG
AGCCTCGTCC AGGCCCATTT GGCCACTGGA GTTGAAGCGG GTAAACCGCT GAATGTGCCC
GCCTTGGATA AAGCCATTCG ACTGGCCAAA CTGCGCCCCG GCATCGAATC CATTAAAGCC
GATCTCTCCC CCGGCAGCAC GCCGGGTACC ACGCAGGTCA ATGTTAAGGT AGAGGAAGAG
AATCTCTTTA GCGGTAGCCT TGGTTTTGAT AACTATGGTT CAGCGTATGT GGGTGAGCAT
GTGGGGCGGG GTACGGTCAA CATCAATAGC CCCTTGGGTT TTGGTGAGCG GTTTAGCTAC
AGCCACGATG TCGCCACAAA AATGAAAACC CAAAAAGCGG CGTTTAGTGT GCCGGTGGGC
ACGCGGGGCT CGCTGGCCGC CGCCTATGGC AAAGTGGATA TGAAAATTGG TCAGGACCTG
TCGATTCTGG ACCTAACCAG CAGCTCCAGT ACTTGGTCGC TGGATGGCCG TTATGCGGTG
CTGGCGGAGG AACGGGACTC GCTGTTTGCC AGTCTAAGCC TGCAAAGCAA GCAGATGTGG
AACGATATGG GTACCTATAA GCTGAACCAT CGCAAGGTGG ATGTCGCCAG CTTGGGGGTG
GAGGGCAGCC ATTTGACCGA TGCTGGTAAT CAGGTTAACT GGAGTGTCAC GGGGAGCTTG
GGTAATGTGG ATCTCTCTAA AAACCTCTCC AACCAAGCGA CGGACGCCAT CACCGCTCGG
ACCGAAGATT TCTTTGGTAA AATCAATTTC AGCTATGATC GCGCCGCACC GCTGGATGCC
GCAGGTAAGT GGAATTTTCG CTCTAAGGTG CAGGGGCAAT TGGCCTCTAA AAACTTGGAT
AGTGGCGAGA AAATGTCATT GGGTGGTCCA ACTGGCATAC GCGCCTACCC GGTGGGTGAG
GGCTCTGGCG ACCATGGCTT GATCGGTAAT GTGGAACTGC ACCGCTCCAT GGGTAAATAC
TACTCTTGGG AAACATCGCT GTATGGCTTC TTGGATGCCG GTTACATCAT CCAAAATGCC
GAGATGTGGA GCAATGCGCT AGACGCGGGT ATCCCCAACG GTTATGCCCT GTTTGGTACG
GGTTTGGGGG CCACCGCCAG TTATAAAGAC CAGGGCGGCT TTAATGTGAT GCTGGCCAAA
AAATTGGGTA AAAACCCTGC GCCAGATAGT GATGGTTCCG ATGCGGATAA TAAAACCGTT
GATCCCCGTT TGTGGATCAT TGGCGACGTG AAATTTTAA
|
|---|
| Protein sequence | MSLPATPPRP MYRHPLCHAT LVLGATVLLT VPDALAVPTN EEAKRLMDGI SREQALHIPA
MQKLPKLGER TIIRANMPRQ RTSLNSLKLT VDGFRLEGHP GVDSAAVDEV ITPWKGRELT
FAEFEQMVHA VAAFLRENGH PDAQVMISRA NIKNRKMSVA VRGLTPASVF LAKQVPVKVE
PRIFVDRFEV TGLTLLDEEE LTQALEPYSG RYLTGTQMQE AADAIANVLR GKGYKVAQAF
MPPQRADSGI LKIEVLEGVV DPASGVNGIV VTGAGKRIRE SLVQAHLATG VEAGKPLNVP
ALDKAIRLAK LRPGIESIKA DLSPGSTPGT TQVNVKVEEE NLFSGSLGFD NYGSAYVGEH
VGRGTVNINS PLGFGERFSY SHDVATKMKT QKAAFSVPVG TRGSLAAAYG KVDMKIGQDL
SILDLTSSSS TWSLDGRYAV LAEERDSLFA SLSLQSKQMW NDMGTYKLNH RKVDVASLGV
EGSHLTDAGN QVNWSVTGSL GNVDLSKNLS NQATDAITAR TEDFFGKINF SYDRAAPLDA
AGKWNFRSKV QGQLASKNLD SGEKMSLGGP TGIRAYPVGE GSGDHGLIGN VELHRSMGKY
YSWETSLYGF LDAGYIIQNA EMWSNALDAG IPNGYALFGT GLGATASYKD QGGFNVMLAK
KLGKNPAPDS DGSDADNKTV DPRLWIIGDV KF
|
|---|
| |