| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2139 |
|---|
| Symbol | |
|---|
| ID | 4481404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 2623170 |
|---|
| End bp | 2624195 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639722883 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_866046 |
|---|
| Protein GI | 117925429 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000366161 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.835393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAACA TTCGTTTTGG GGCGGTTTGT GCTGCTGCGG CCTTAGCGGT AGCAGGTATA
GCCTGGAGCG GTGGTGCTCA GGCAGCAGAA TATGTCATCA AACTATCGCA CGTTGTTTCA
CCCCAGACCC CTAAGGGCAA AGCCGCCGAT ATTTTTGCCC AATTGGTGAA CGAACGCCTG
CAAGGCAAGG TGCGTGTCGA GGTTTTTCCC AGTTCACAAC TTTACGATGA CAATAAGGTC
ATGGAGGCCA TGCGCCTGTC GCGTAGCAAA ACCGTGGGCT TGATGGCGGC CCCATCGCTT
TCTAAATTTG TGAAGTTTTC TGGACAGTTG CAGGCGTTTG ATCTGCCCTT CTTGTTTGAC
AGCATTGGCG ATGTGCACAA ATTGGTGGAT CATCCTGTAG CGGATAAAAT GACCGATCCG
TTGAAAAGCA AGGGGTTGCG AGCCTTGGGC TTTTGGGACA ACGGCATGAA GGTATTTTCG
ATCAAGGGGC CTAAACCCTT GATGGATGTG CCTGATGATT TTAACGGCAT GAAGTTTCGC
ATCCAAAGCT CGGACGTGCA TTCGGAGATG ATCAAGGCAC TGGGTGGCAC ACCGCAGAAA
CTCCCCTTCA AGGAGGTCTA TACCGCTTTG GGGCAGGGTG TGGTGGATGG ACAAGAGAAT
GCCTGGTCCA ATGTTTACTC CAAGAAGTTT CATGAAGTAC AGGACTATAT CACCGTTTCC
AACCACTCCT ACCTGGGTTA TCTGTTGGTT GTGAGTGAGC AGTTCTGGAG CAACCTGCCT
GCGGAGATCC GCACAGAGCT GGAAAAAGCG GTGAAAGAGG CCACCATGGC CAACCGTCGT
TTCGCGGCAG AAGCTGACAG TGGCGACCGG TTAAAAGTGG AACAAGCTGG TTTTGCTAAA
GTGGTGGATA TGCCTGTAGA AAAGCGTAAA GCTTGGCGTC AAGTCACCAT GTCGGTGGAA
GATAAGTTTC GCGATGAGAT TGGTGCGGAT CTGCTGAAGG AGATCCACCA AGTGCTGGAT
AACTAG
|
|---|
| Protein sequence | MKNIRFGAVC AAAALAVAGI AWSGGAQAAE YVIKLSHVVS PQTPKGKAAD IFAQLVNERL
QGKVRVEVFP SSQLYDDNKV MEAMRLSRSK TVGLMAAPSL SKFVKFSGQL QAFDLPFLFD
SIGDVHKLVD HPVADKMTDP LKSKGLRALG FWDNGMKVFS IKGPKPLMDV PDDFNGMKFR
IQSSDVHSEM IKALGGTPQK LPFKEVYTAL GQGVVDGQEN AWSNVYSKKF HEVQDYITVS
NHSYLGYLLV VSEQFWSNLP AEIRTELEKA VKEATMANRR FAAEADSGDR LKVEQAGFAK
VVDMPVEKRK AWRQVTMSVE DKFRDEIGAD LLKEIHQVLD N
|
|---|
| |