| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2129 |
|---|
| Symbol | |
|---|
| ID | 4483951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 2611504 |
|---|
| End bp | 2612754 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639722873 |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase |
|---|
| Protein accession | YP_866036 |
|---|
| Protein GI | 117925419 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.964725 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTACGG ATGACAACAT GGAACTCATG GACATACACC GCCGACTTAA TCGTTTGTCG
GATGTGAATC GTCGTCAACT GCTACAGCTT TTGGCTCTGA CCTCTGGTGG TATGTTACTG
CCAAATCTTG CTGAAGCATC GCTGGGGCCG AATCAAATCA AAGATATTCG CGTCTGGACC
GCCCCTGATC ACTCCCGTGT GGTGTTTGAT CTGGAACGCC CGGTTAAACA CACCCTGTTT
CGCTTAAAAA ATCCTGACCG AGTTGTATTA GATATTGAAA ATGCGATTCT TTCTCAAAGC
ACAAGCCATT TAAGAATCAA AGATCCGGTG GTGCGGGCGT TCCGCATGGG TATCCCCCGG
CCAGATACAA CCCGCGCCGT CTTTGAGCTT AATGAGGAGG TGCGCCCTCG CTCGTTTTTA
CTGAAGGCGA CTAAAGATCG TGGGCCACGC TTGGTGATAG ATCTTTACCG CAAGGGCGAG
CTGGAGCGTC AGGCGAGGTT GGAGCGTGAG TATGACCCGT TCCGTAATCG CACCCCGGTA
CGTGAAAATA TGGTGGTGGT GATTGATCCC GGTCATGGCG GTGAAGACCC TGGCGCAACC
GGTCCTTCAG GTGTCAGAGA AAAGGATGTG GTTCTGACAG TCGCCAAAAA ACTGGCGGCC
ATGGTTAACG CCACACCCGG TTATGAAGCC AAACTCACCC GTGAAGGGGA CTATTACGTC
TCATTGAAAA AGCGGGTTGG CATTGCCCGC CAATATGACC CTGATCTGTT TATGAGTTTG
CACGCAGACT CCTTCCGTAT TCGTTCGGCA CGGGGTACTT CCGTTTACTG TCTTTCTGAG
CAGGGTAAGC CGACCCCGGA TCGTGCCATT AAAGATCTGG TGGAGCGGGA GAATAGCACC
GATTTGGTGG GAGGGGTTAA CCTGGGCAAG GTGGTGGATC CTGAAGTTGC CGGTATTTTG
ATGGATCTGT CGCAGCGCGA CTCGTTAAAC CGTTCCTTGG TATTGGGGCG TAACCTGTTA
GACTCGCTGG ATGCTATGCC CCAGGTACGG TTGCACTACC GTAATGTCAA GCAGGCGGGC
TTTGCGGTCT TAAAAGCACC TGATATTCCA TCCGTATTGG TTGAGTTGGC CTTTTTATCC
AACCCCAATG AAGAGATGAT GATGAAAAAA GAGAGCTACC AAGCCACGCT GGCGGCTGGG
CTGCTCAAAG GGGTGGAGCG TTTCGCCAAG GCATCCCGAG AGATCAGCTA G
|
|---|
| Protein sequence | MLTDDNMELM DIHRRLNRLS DVNRRQLLQL LALTSGGMLL PNLAEASLGP NQIKDIRVWT
APDHSRVVFD LERPVKHTLF RLKNPDRVVL DIENAILSQS TSHLRIKDPV VRAFRMGIPR
PDTTRAVFEL NEEVRPRSFL LKATKDRGPR LVIDLYRKGE LERQARLERE YDPFRNRTPV
RENMVVVIDP GHGGEDPGAT GPSGVREKDV VLTVAKKLAA MVNATPGYEA KLTREGDYYV
SLKKRVGIAR QYDPDLFMSL HADSFRIRSA RGTSVYCLSE QGKPTPDRAI KDLVERENST
DLVGGVNLGK VVDPEVAGIL MDLSQRDSLN RSLVLGRNLL DSLDAMPQVR LHYRNVKQAG
FAVLKAPDIP SVLVELAFLS NPNEEMMMKK ESYQATLAAG LLKGVERFAK ASREIS
|
|---|
| |