| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2092 |
|---|
| Symbol | |
|---|
| ID | 4480841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 2563904 |
|---|
| End bp | 2566429 |
|---|
| Gene Length | 2526 bp |
|---|
| Protein Length | 841 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639722836 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_865999 |
|---|
| Protein GI | 117925382 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0705515 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.145006 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCC CCAACGCTCT ACAACTGCTG CGCTTTTGGC AACAACAGGT ACCCCTATCG
CTTAAAGTCT TGGTGCTATT GGGCATGGTC GGGGTTATCT CGTGGAATGT GCTGGATCAT
ATGCAAAACC GCTGGGCCAA CAAACTTTTT ACCCAGCAGT TAGAAGATAC CCTGGAGCGT
CGCTTTAGCC GCAGCCTAAC CCAATTAAAA AGCTATCTGC GGCAACAAAA AAAATCTACC
CAACTGTTTG TGCAACACGC CCAGTTGGTC AACTATTTAC GCATTCACCA CGACTGGGGA
TGGGGCGATG GGGAGAGCCT GAAAATTCAT CAAACCCTGC CCCCTTGGCT ACCCTCCGCC
CCCATGATTC GCGATTTCAC CCGCAGTGCC AGCTTTTTAT TGCTGGACGA AAATTACCAT
ATGCAGGAGC TGTTTTTAAA CGGTCGCACC GATCTTGCTA AACAGCATCT CTCCCCCGCC
CTGCTGGATT ATCTACGCGA GGGAGGCCCT TCAAGCATTA CCCAATCCAA CGGGGTCCCC
CTATTTGTGG TGGCCGAACC CGTACAAGAT GCCATCGGCG AAACCTTAGG TGTGCTGGCA
CTTATTTTAC CCCTGGATGA CCGTTTTCTC ATCGACTTTA CCCGTCAATT TGACCTGGAA
GGCATTCAGG TTTTTGTGGA TGAGCTTAAC AAACAGGTGA TCGCCAGCAG CGACCCCCAC
CATGTGCCAG CTGGATCGAC CATGCAACAA TTGGCCAAAT CCTATCTGTT TGTTGGTCAA
GATTTTTTTA ATTATGCCTT CTCTTCAGAG ATCACTTTTC ACGTGGCAGC GTTAATCCCT
CGTTCCGCAG TCGATAATCT ACGCCAGCAA ATTCTTAATA CCGGTCGCAC CGAAAAGGTT
GTCTCGACCC TGGTGTTTAT CGCTACCTTT TTATGGATCC TCTTCTGGTT ATCTGGAAAA
TTAAAACGGC TCTCCCAGCA GATCAATCTC TTTTACGAAC AAAATCTTGG GGTGCATCTG
GAGGTCCCTC AGCGGGGCGA CCAACTGTTT GCCCTGCACC ATCTGCTCAG CCGTTTTTCC
CAAGAAATCA CCCGCTCGCG AGAGGGCTTG ACCCAGGAAC TCACCGAGCG CAAACGCACC
GAAAAGCTGC TACGCGAGAG TGAATTTCGC TACCGTAACC TATTAGAAAA TATCACCGAT
TGGGTGTGGG AGTTGGATGA ATACGGCACC TTTAGCTACA GCAGCCCCCG CATTGCCTAT
CTGTTGGGCT ATCAACCGGA AGAGATTATC GGTAAAACAC CGCATCTGTT GGTTGACCCA
ACGGAGCGTC AACAGGTGGA GAGGCTGTTC CGTGAAATTG CGGCTCAGCA GAGCCCGCTG
GAAATTTTTA CCAGCACCAT GCTCCACACC AAAACGGGGC GACAAGTGAT TTTAGAGACC
AACGGCGTGC CCTTTTACGA TCATCAGGGG CGGTTTAAGG GGTACCAGGG CATCTCTCGG
GATGTCACCT TACGGCATAA CTATGAAGCC TCGTTAAAAC AGTCTAACCA GCGTTTGCAA
AGAGTTTTGG ATGGCCTCGA TGCCTTGGTC AGAGTAACCT CGCTGGATCA GCAGGAGAAT
TTTTTTATCA ATGCCATGGC CCAACAGCAC CTGCACATCC TACCCTGCAC CCAGCAGACA
CTGCATATGG ATGACACCCT GCGCCAGAGC CTCTGTGATG AAAACGCCTT GATCCATCCC
GACGGAGAAC CGACACGGCG CATCTCTGGA GAATATTTTC ATCCCACCGA AAAGAGTTGG
TATGCGGTGC GTGTGCTGGC CATTCGCTGG GTGGATCATC GCTTGGCCCG TTTGGAGATT
ATCACCGATA TTACAGAAAA AAAGGCGTTG CAAGAGTCCC TGCGCCACCT AAAAAATAAA
CTTGAAATTG AAGAGCGTAA ACGGCTGGGC AACCTGCTGC ATGAGAGCAT TTGCCAATCG
TTACAAGCGA TTAAGCTTGG CTTAGAGATG AAAAGTCTGG TGGCCGAGCA AGCCAGTATT
TCCCTAAAAG ATGAGGTCGG GGAGTTACAG GATTGCATTG GTCAACTGCG GGATATTACC
ACCGTGCTGC GCCCCTCCTT TTTAGAGCGT ATGAACTTAG AGGAAGCAAC CCGTTGGTGG
TGTCACCGCC TAAGCCGTAA CTGGGAGGGC ACCCTAGATC TACACACATC CGGTAATTTT
AATGAACTGG ACGCAGAGAT CACCTACAAT CTATTCCGTA TTCTCCAGGA AGGCTTAACC
AACGCCCTCA AGCATGCTCA AGCCAAGGTT TTACAGATTG AGCTCAGTCA TGTAGAAGGC
GAAGGTTTTA CCTTGGTGGT TGCCGATGAT GGTGTGGGTA TGGACCTAGC CCAAACCCGG
CGCACAGCCA AGGGGTTGGG GCTCTCTATT ATTTATGAAC AGGCCGAGCG ACTGGGTGGT
ACGGCTCATT TTACCACAGC CCCCCAGCAA GGGCTCATTA TCGCAGTGAG GGTGCCAGAA
GCATGA
|
|---|
| Protein sequence | MNRPNALQLL RFWQQQVPLS LKVLVLLGMV GVISWNVLDH MQNRWANKLF TQQLEDTLER
RFSRSLTQLK SYLRQQKKST QLFVQHAQLV NYLRIHHDWG WGDGESLKIH QTLPPWLPSA
PMIRDFTRSA SFLLLDENYH MQELFLNGRT DLAKQHLSPA LLDYLREGGP SSITQSNGVP
LFVVAEPVQD AIGETLGVLA LILPLDDRFL IDFTRQFDLE GIQVFVDELN KQVIASSDPH
HVPAGSTMQQ LAKSYLFVGQ DFFNYAFSSE ITFHVAALIP RSAVDNLRQQ ILNTGRTEKV
VSTLVFIATF LWILFWLSGK LKRLSQQINL FYEQNLGVHL EVPQRGDQLF ALHHLLSRFS
QEITRSREGL TQELTERKRT EKLLRESEFR YRNLLENITD WVWELDEYGT FSYSSPRIAY
LLGYQPEEII GKTPHLLVDP TERQQVERLF REIAAQQSPL EIFTSTMLHT KTGRQVILET
NGVPFYDHQG RFKGYQGISR DVTLRHNYEA SLKQSNQRLQ RVLDGLDALV RVTSLDQQEN
FFINAMAQQH LHILPCTQQT LHMDDTLRQS LCDENALIHP DGEPTRRISG EYFHPTEKSW
YAVRVLAIRW VDHRLARLEI ITDITEKKAL QESLRHLKNK LEIEERKRLG NLLHESICQS
LQAIKLGLEM KSLVAEQASI SLKDEVGELQ DCIGQLRDIT TVLRPSFLER MNLEEATRWW
CHRLSRNWEG TLDLHTSGNF NELDAEITYN LFRILQEGLT NALKHAQAKV LQIELSHVEG
EGFTLVVADD GVGMDLAQTR RTAKGLGLSI IYEQAERLGG TAHFTTAPQQ GLIIAVRVPE
A
|
|---|
| |