| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1967 |
|---|
| Symbol | |
|---|
| ID | 4481280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | - |
|---|
| Start bp | 2445344 |
|---|
| End bp | 2446024 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639722715 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_865879 |
|---|
| Protein GI | 117925262 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1943] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00827335 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.496503 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCACCTC ATGTAACACA GCGTGGAAAT CGTCGTCAGG ATGTATTTTT TGAGGAAGCA
GATTATTTGT TTTATTTAGA AACAGTAAGC TATTGGAGCC AAAAATACGG TGTGGAGGTA
TTAGCTTATT GTCTGATGAC GAAGCATATC CATTTGGTAG CGGTTCCATC GACGGAGCAT
GGTCTTCAAG AAGTAATGCG TGAAACGCAT TTGCGCTATG CAAGGCGCAT CAATTTTAGC
AAAGGTTGGA CGGGCCACTT ATGGCAGGGG CGCTATGCCT CAACACCCAT GGATGAGCCG
CATATGTTGA TGGCGGTGCG GTATGTAGAG TTGAATCCTG TCTGTGCCGG TATGGTTGAG
GGAGCAGAGC ATTATCGCTG GAGTAGCGCC AAAGCTCATA TGGAAGGGAA AGACGACAGT
CTAGTAAAGG TGTCACTATT ATTGGAGTTG GTGCCGGAAT GGAGCCGTTT TCTAAAACAA
GGTATAGGCT CGAAAGAACA AGAACGAATA AGGCTGCATG AGCGCACAGG AAGGCCAATG
GGAAGAGATT CTTTTATTGA GGAACTTGAA AGCCGTTTAG GGGTAACCGT TCAGAGACCC
CGATATCAAG CGGCTACTGG AGCCGGTAAC GGCGGTACGA GGTTTCCCTT TCTCCGTTCA
GCAATCACCT CAGCAAGATA G
|
|---|
| Protein sequence | MAPHVTQRGN RRQDVFFEEA DYLFYLETVS YWSQKYGVEV LAYCLMTKHI HLVAVPSTEH
GLQEVMRETH LRYARRINFS KGWTGHLWQG RYASTPMDEP HMLMAVRYVE LNPVCAGMVE
GAEHYRWSSA KAHMEGKDDS LVKVSLLLEL VPEWSRFLKQ GIGSKEQERI RLHERTGRPM
GRDSFIEELE SRLGVTVQRP RYQAATGAGN GGTRFPFLRS AITSAR
|
|---|
| |