Gene Mmc1_1916 details

Gene Information

• Locus tag: Mmc1_1916
• ID: 4481140
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Magnetococcus sp. MC-1
• Kingdom: Bacteria
• Replicon accession: NC_008576
• Strand: +
• Start bp: 2381088
• End bp: 2384606
• Gene Length: 3519 bp
• Protein Length: 1172 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 639722663
• Product: TPR repeat-containing protein
• Protein accession: YP_865830
• Protein GI: 117925213

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.506674
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 11
• Fosmid unclonability p-value: 0.439815
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTTAAAGA CAGAAACCCG AATCACACTA ACGCTGACCT CAAAAGGGGA TGCGCTGGAA 
TTTTCGTGGC TTCATGAAAA TGCCGCACTG GGCAGCAAGC ACAAGCTCAC CGCAGAGATG 
CTACAGCCCC TGCATGCAGC TTTGAGCGGC TACTGGCAAG CTTACGCCCG CGCCACCACC 
CCTCTCTTGC TCCAAGAGGC CGCACTGCAA GCGGCCAGTC GCGAATTGCA TGCGCTCTTT 
ATCGCTCCCG TTTGGCCTGA GTTGACCGGG CTGTTGCCCA TGGATGGTGA GCCCCCGCTT 
TTGCTCAGCA TCCGCTGCAA CACCCCACAG CCGCTGAGCT GGCCCTTTGA GCTGATCATG 
TTGGAGGATG CCCCGGAAAC GCCGCTGGGA TTGCGTCAGG ATCTTTATAT ACGCCGCCTA 
CCTGCGGGCA GCCGGGATTC GGTGCGCTGT TGTACCACCC TGCCCCCGGC ACCCTTGCGC 
AGTTTTTTTA TCGCCCACGC CAACGCCAAT GCGGCTGCTT TGGCAGAGCA AGAGGGAACC 
TATCTACAGA CCATCGCTCA GGCGATGGCA GTGCATCATC ACGAGATCAT CCCCCGCGTG 
GGGGATGCCA TTCTCATGAA TGATCTGCGC CAAGCGATAC ACCAATTTCA GCCCCATATC 
ATCCACCTAA ACGGCGCACT GGTGATGGAT GAACAGGAGG GGCCGGTAAT CCTTTTTGAT 
GGCCCTAAAG GGGCACCCCA ACAGGTGACA GCCAGCCAGT TTGAAGAGGA GATTTTGCGC 
AACAGTGGTG CCCAAGCGGT GGTGATCTCG GCCCGCATCA ACCGCAGTGG GGAGAGCCCC 
ATGGCTGCCA TCCACGCCTT TGCCCATCAG TTAAGCGCGG TGAGCGGCTG TTTTGTGCTA 
ACCTGCGCTA AAACCATGGC ATCGGCGGGG GCTTCTGCCT TTTTCACCCC CTTGTATGCC 
GCTTTGGCGG CGGGCAAATC CCTGGATCAC GCTCTAACCC GTGGCTGCCT GGAGAGCCAG 
CAGAGCGACG ACTTGAGCGG CCACTTTAAT GCAGGCGCAC CCGTGCTCTA TGGTGAAAAT 
GCCCGTTCCT TGTTAATCAA CAATGCCGCC GATGCCCCGC GCATTCATCC AGAGCCGCTA 
CAGGAACATT TTCCCGTTCC CGATCAAGCG ATTTTTAAAG TACCCCAGCC CTTCACCGGG 
CGGCGTATGG AGCGCATGGC TCATGAGGAG GCACTGCACA GTGGTGCCAC CCAAGCCCTG 
CTGCTCTATG GACCCGAAGG GGTGGGTAAG AGCGCCCTGG GAGCACTGTT TGCTTGGAGC 
CTCTCTCGTG GCCAACATAT CCCCATTGTG CTGAATGGCT CCCCAGCCAA CCCTATTACG 
GTGCATCGGT TGGTCGAGGC GGTAGCCCAG GTGTTATTAC ACCATGGTCT GCATGAAGAG 
CATGAGCTGC TGGATAGCGA ACAGCTCACT TTGGAGAGCC GCTTGAGCTT TTTGGTGGAG 
TTGCTTAACC GGCGTCTCTG CGCCGTGATC CTGTTGGATG GCCTGGATCA CTCCATGAAC 
AATGCAACCG GCACCTTTGC AGACCCCTTA CTGAAAAAAT GGCTCTCGAC CCTACTGGTG 
CGCCTGAGTG GTGTTTCACG CTTGATCCTC ACCAGCCGCA TCAAACCCCA ATGGGAGGCG 
GCGGTGCTGC CCCATACGGC GGTTATCCTT ACTCTGGAGA GCGTGCCAAA AGCTGACTAT 
TTAAAGGGCT TCTTTAACCA TGCGGGTCTC ATTAAGCGGC TGGCGGCGGG GGATCTGACA 
TGGCCCCTCG TTGAACAGCT TTATGGGCTG TTTCTGGCCA CCTTCGCGCC GGTGCGGCTG 
CTGCTTAATT GGGCCGATAC CCTGCCCGCC GATGCACTGG CAGAGTGCTG TCAGGAAATT 
TTAGCCCATG ACCAAGTACC CCTTGATCCC TACAGCAACC ACGCCCCCGG CAGTGATGCC 
AGCGGTCAAG CTCTCATGCG TCAGATTTTG CAGAGCGTGA CCGAGGAAGA GGCTCTTGGT 
TGGCAAACCT GGGCCGTTAC TCGGGTTTGG TTACCCCTCT CCAGTCTGGA AACGTTGTGC 
GAACTACCCG TGGAGCATCT TAGCGCCACC CTTAACCGCT GGGTTGAGCT CGGGGTAGCC 
CAATCCCTCC CGGGTACCGA TACCAGCGAC CCGCTCTATC GCCTAACCCC TTTTGTGCGC 
GAAGCGTTGC AATCCAAGGC ACTGTGCGTC AACAAAGAGG TGTGCCAACG CCAACATTTG 
CGCATGGGGG AGATCCTTAA AAGCCTTATC CTGAGCGACC GTAGCGGGCA GGTTGGCAGC 
AGTTGGTTTG ACCTGTTGCT GGAGGCTCGC GAGCACTTTT TCCAGGGGGG GGATATTGCC 
GCCTATTTTG AATTTTCTGA ATCGGTTGGC ACCGCACTGG CTCGCCACGG GCATATTGAA 
GCGGCCATTC GTTTGCACAT GGATGCCCGT GAACGCAGTG GGCAACCCGC CCCCATGGTC 
TCTATCGCTC GTCTCTATCT GGAGACCAAC CGCCCCGATG AAGCCCGTAC CTGGCTGGAA 
CGCGCGGTAG AGGCCTCTAC GGGGGGGAAA CATCCCACGG TCGAGGGGGC CGCCCTACAA 
ACCATGGCGG CCATGGCGAT GTCGGAGCGC CATGTCAAAC AGGCACGGGT CTGGCTGGAA 
CAGGCCCTCG CCGTCCAGCA CCAGCACCAC GATGCCGCTG GTGAGGCCGC CAGCCTCAAC 
CAACTGGCCA ACATAACCTT GGCTGAAGGA GATTTGGCGC AAGGCATGAC CCATTTGCAA 
GCAGCCTTGC CCTTGTGGAA AAAGGCTGGC AATCGGGTTA ACCGCGCCGC CACCTTGCAC 
CAGTTGGGCA TCCTCTTTCT GCAAAGTGGG GATATGACCG AGGCTTTAAA ACATCTGGAA 
AAGGGGTTGG CACTCTACCG CCTGCTGGGC AATGGCCAGG ATTTGGGCAT GCTACTGTCA 
CAATTGGGGG GCATCTATTT TCAAAAACAG AGCTCGGACA CCGCCAAAGC CTATTTTGAA 
GAGGCCATGG AGTATCTGGA ACAAGAGCCC GTGCTTGCCC CGCAATTAAG CTTTGTGCTG 
CACCAGTTGG CCACCATCCA CCTCAACAGT GGTGCGCTAA AAGAGGCCGA GTTACACCTT 
AAAAAGGCAC TCTTGCTCAA ACAAAAACTG GATGATCGTC GGGGAGAAGC AGCGGCATTC 
TTTCAATTGG GTCGCCTTGC CAAGGAGAAA GACAAGGTGG AAGAGGCGAT GCGCTTAATT 
GGCATTAGCT ACCACATTGA TGTGGAGATT GGCAATCCCG ATGCCCACCA AGAGCTTGAG 
GTCTTTAACT TTATCGCTCA GAGCATCGAG ATGCCCGAAT ATGAGGCCGA AATGATCATG 
CAGGAGGCAT GGGAGCTCTA CAGCAAAGAT CGAGGCCACA GCTTGATTGC AGAAATTTTC 
CCCGTACCCA AAACCATCCC CATTAAGATG ATGTCCTAA 

 

Protein sequence

MLKTETRITL TLTSKGDALE FSWLHENAAL GSKHKLTAEM LQPLHAALSG YWQAYARATT 
PLLLQEAALQ AASRELHALF IAPVWPELTG LLPMDGEPPL LLSIRCNTPQ PLSWPFELIM 
LEDAPETPLG LRQDLYIRRL PAGSRDSVRC CTTLPPAPLR SFFIAHANAN AAALAEQEGT 
YLQTIAQAMA VHHHEIIPRV GDAILMNDLR QAIHQFQPHI IHLNGALVMD EQEGPVILFD 
GPKGAPQQVT ASQFEEEILR NSGAQAVVIS ARINRSGESP MAAIHAFAHQ LSAVSGCFVL 
TCAKTMASAG ASAFFTPLYA ALAAGKSLDH ALTRGCLESQ QSDDLSGHFN AGAPVLYGEN 
ARSLLINNAA DAPRIHPEPL QEHFPVPDQA IFKVPQPFTG RRMERMAHEE ALHSGATQAL 
LLYGPEGVGK SALGALFAWS LSRGQHIPIV LNGSPANPIT VHRLVEAVAQ VLLHHGLHEE 
HELLDSEQLT LESRLSFLVE LLNRRLCAVI LLDGLDHSMN NATGTFADPL LKKWLSTLLV 
RLSGVSRLIL TSRIKPQWEA AVLPHTAVIL TLESVPKADY LKGFFNHAGL IKRLAAGDLT 
WPLVEQLYGL FLATFAPVRL LLNWADTLPA DALAECCQEI LAHDQVPLDP YSNHAPGSDA 
SGQALMRQIL QSVTEEEALG WQTWAVTRVW LPLSSLETLC ELPVEHLSAT LNRWVELGVA 
QSLPGTDTSD PLYRLTPFVR EALQSKALCV NKEVCQRQHL RMGEILKSLI LSDRSGQVGS 
SWFDLLLEAR EHFFQGGDIA AYFEFSESVG TALARHGHIE AAIRLHMDAR ERSGQPAPMV 
SIARLYLETN RPDEARTWLE RAVEASTGGK HPTVEGAALQ TMAAMAMSER HVKQARVWLE 
QALAVQHQHH DAAGEAASLN QLANITLAEG DLAQGMTHLQ AALPLWKKAG NRVNRAATLH 
QLGILFLQSG DMTEALKHLE KGLALYRLLG NGQDLGMLLS QLGGIYFQKQ SSDTAKAYFE 
EAMEYLEQEP VLAPQLSFVL HQLATIHLNS GALKEAELHL KKALLLKQKL DDRRGEAAAF 
FQLGRLAKEK DKVEEAMRLI GISYHIDVEI GNPDAHQELE VFNFIAQSIE MPEYEAEMIM 
QEAWELYSKD RGHSLIAEIF PVPKTIPIKM MS