| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1896 |
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| Symbol | |
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| ID | 4483595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 2357251 |
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| End bp | 2358945 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639722641 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_865810 |
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| Protein GI | 117925193 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000133427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.619157 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTAAACT TCCGCAGTAT TGGTACCCGC ATTCTTGTTT TAGTTGGCCT CGCTGTGCTG
GTTGGTTTGT TGGTGCAGAT GTTTTTTTTC CTGCGTCATC AAGAAAACGG TATTATGGCT
CAAAATGAGC GTACCATGGG TGTTCTGGCT CATTCTGTCA GCCAATCCTT ACAAACGGTC
ATGCTCTCTG GGCAAGCGGA TGAAGCACAA CAATTCGCCA ATGACTTGGC AAAAGTACCA
GGTATCGTCG ATTTTCGCAT CTACCGGCTG GATGGTCATG CTGCCTTTTC AGACAACACC
ACCATCCAAA AAGTTAATCA AAAGCTGGAT AATCCAGAGG CCTTTTTGCT GCATTCTGAT
CGGCAAGCGG TCGACGCTCG CTTACCGATT GCCGCAGACC ATATTCAAGA AATTTTACAA
AAGGGGACGT TGCCCAAATA TACCACCGAC GCATCTGGTG TGCCCACCCT CACCTATTGG
TCCCGCATTG ATACCAGTGA TCAGTGCCAA GCGTGCCATA TGGAAGAGGA GAAAGCCCGT
GGTGTGCTCT GTTTAACCAC CACCTTAGAC GCTGTACATA ATGATATTCA GGAGACCCGT
TATGGTGCTG TGATTATCAT GATTTTGGCA CTGTTGGTGG TCTTTCTGCT AACCTACTTG
CTGATTAAAA GTTCTGTGGT ACGGCCCATT AAAGATGTCA GCAATGCCAT GGACCGCATC
TCCAAAGGGG ATTGGGAACA AAATGTGCCC GAGACGGGTA ATGATGAGCT TGCCCATATG
GCCCGAACCT TTAACCGCAT GATCGGTGAA TTGAAAAACA CCTATCGCGG ATTAGAGAGT
GAGCAAAACA AACTGCAAAC CATCATCCGC AGTGCCAAAG AGGGCATGAT TGTCACCAAT
CCCGATGGGG ATGTGGTCTT GGTCAACCCC TCCGCTGAGC GTATCCTTGG CAAAACCGAT
GATGAAATCC GTGGCGAGGG CTTTTTCCAA CTGATTGATG ATCCCGACTA TATCCGTACC
TTTTTAGAGA CCGGTGGTTT TGAAATGCCG GAAACCGTTG TTTATAAACA AAGGGTGCTT
AATCTTTACG TGCGTTCCAT TAAGGATGAC CATGGCGAAC CCATTGGCTC AGCCGCGCTG
ATCCTGGATG TTACCGATGA AAAACGCCTC GAACAGCAGC TACGGGAACT TTCAACCACC
GATGGCCTGA CGAAGTTGAT TAACCGGCGC CGTATGGATG AACTGCTGGA TGAAGAGCTT
AAAAGAGCTG TACGCTATGG TTTAAACCTT AGCATCTTGC TGCTGGATGT CGATCACTTT
AAAAAGTTTA ACGACACTTA TGGTCACGAG CAGGGCGACC ATGTGCTCAT CGCTCTGGCC
GCAGAGATGA AATCCTATTT CCGCAACATT GATTATCCCT GTCGTTACGG CGGTGAAGAG
TTTTTTGTTA TCCTGCCCAA CACCGATGCT GACGGCGCGA TTAAAGTTGC AGACCGCTTG
CGTGAACGGG TGGCAGAGAA GGAAGTTGAC GGCCTAAGAG TGACCATAAG CATCGGTGTG
GCAAGCTATC CCGATCTTTC GATCACCCGG CCCGATGCCA TGGTGCGTGC CGCCGATTCG
GCCCTTTATG TGGCTAAAGA GCAGGGACGA AATAAAGTGG TTTACGCTTC TGAAGCCAAA
CAAACCCCCC ATTAA
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| Protein sequence | MLNFRSIGTR ILVLVGLAVL VGLLVQMFFF LRHQENGIMA QNERTMGVLA HSVSQSLQTV
MLSGQADEAQ QFANDLAKVP GIVDFRIYRL DGHAAFSDNT TIQKVNQKLD NPEAFLLHSD
RQAVDARLPI AADHIQEILQ KGTLPKYTTD ASGVPTLTYW SRIDTSDQCQ ACHMEEEKAR
GVLCLTTTLD AVHNDIQETR YGAVIIMILA LLVVFLLTYL LIKSSVVRPI KDVSNAMDRI
SKGDWEQNVP ETGNDELAHM ARTFNRMIGE LKNTYRGLES EQNKLQTIIR SAKEGMIVTN
PDGDVVLVNP SAERILGKTD DEIRGEGFFQ LIDDPDYIRT FLETGGFEMP ETVVYKQRVL
NLYVRSIKDD HGEPIGSAAL ILDVTDEKRL EQQLRELSTT DGLTKLINRR RMDELLDEEL
KRAVRYGLNL SILLLDVDHF KKFNDTYGHE QGDHVLIALA AEMKSYFRNI DYPCRYGGEE
FFVILPNTDA DGAIKVADRL RERVAEKEVD GLRVTISIGV ASYPDLSITR PDAMVRAADS
ALYVAKEQGR NKVVYASEAK QTPH
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