Gene Mmc1_1896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_1896 
Symbol 
ID4483595 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp2357251 
End bp2358945 
Gene Length1695 bp 
Protein Length564 aa 
Translation table11 
GC content49% 
IMG OID639722641 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_865810 
Protein GI117925193 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG5002] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000133427 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.619157 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTAAACT TCCGCAGTAT TGGTACCCGC ATTCTTGTTT TAGTTGGCCT CGCTGTGCTG 
GTTGGTTTGT TGGTGCAGAT GTTTTTTTTC CTGCGTCATC AAGAAAACGG TATTATGGCT
CAAAATGAGC GTACCATGGG TGTTCTGGCT CATTCTGTCA GCCAATCCTT ACAAACGGTC
ATGCTCTCTG GGCAAGCGGA TGAAGCACAA CAATTCGCCA ATGACTTGGC AAAAGTACCA
GGTATCGTCG ATTTTCGCAT CTACCGGCTG GATGGTCATG CTGCCTTTTC AGACAACACC
ACCATCCAAA AAGTTAATCA AAAGCTGGAT AATCCAGAGG CCTTTTTGCT GCATTCTGAT
CGGCAAGCGG TCGACGCTCG CTTACCGATT GCCGCAGACC ATATTCAAGA AATTTTACAA
AAGGGGACGT TGCCCAAATA TACCACCGAC GCATCTGGTG TGCCCACCCT CACCTATTGG
TCCCGCATTG ATACCAGTGA TCAGTGCCAA GCGTGCCATA TGGAAGAGGA GAAAGCCCGT
GGTGTGCTCT GTTTAACCAC CACCTTAGAC GCTGTACATA ATGATATTCA GGAGACCCGT
TATGGTGCTG TGATTATCAT GATTTTGGCA CTGTTGGTGG TCTTTCTGCT AACCTACTTG
CTGATTAAAA GTTCTGTGGT ACGGCCCATT AAAGATGTCA GCAATGCCAT GGACCGCATC
TCCAAAGGGG ATTGGGAACA AAATGTGCCC GAGACGGGTA ATGATGAGCT TGCCCATATG
GCCCGAACCT TTAACCGCAT GATCGGTGAA TTGAAAAACA CCTATCGCGG ATTAGAGAGT
GAGCAAAACA AACTGCAAAC CATCATCCGC AGTGCCAAAG AGGGCATGAT TGTCACCAAT
CCCGATGGGG ATGTGGTCTT GGTCAACCCC TCCGCTGAGC GTATCCTTGG CAAAACCGAT
GATGAAATCC GTGGCGAGGG CTTTTTCCAA CTGATTGATG ATCCCGACTA TATCCGTACC
TTTTTAGAGA CCGGTGGTTT TGAAATGCCG GAAACCGTTG TTTATAAACA AAGGGTGCTT
AATCTTTACG TGCGTTCCAT TAAGGATGAC CATGGCGAAC CCATTGGCTC AGCCGCGCTG
ATCCTGGATG TTACCGATGA AAAACGCCTC GAACAGCAGC TACGGGAACT TTCAACCACC
GATGGCCTGA CGAAGTTGAT TAACCGGCGC CGTATGGATG AACTGCTGGA TGAAGAGCTT
AAAAGAGCTG TACGCTATGG TTTAAACCTT AGCATCTTGC TGCTGGATGT CGATCACTTT
AAAAAGTTTA ACGACACTTA TGGTCACGAG CAGGGCGACC ATGTGCTCAT CGCTCTGGCC
GCAGAGATGA AATCCTATTT CCGCAACATT GATTATCCCT GTCGTTACGG CGGTGAAGAG
TTTTTTGTTA TCCTGCCCAA CACCGATGCT GACGGCGCGA TTAAAGTTGC AGACCGCTTG
CGTGAACGGG TGGCAGAGAA GGAAGTTGAC GGCCTAAGAG TGACCATAAG CATCGGTGTG
GCAAGCTATC CCGATCTTTC GATCACCCGG CCCGATGCCA TGGTGCGTGC CGCCGATTCG
GCCCTTTATG TGGCTAAAGA GCAGGGACGA AATAAAGTGG TTTACGCTTC TGAAGCCAAA
CAAACCCCCC ATTAA
 
Protein sequence
MLNFRSIGTR ILVLVGLAVL VGLLVQMFFF LRHQENGIMA QNERTMGVLA HSVSQSLQTV 
MLSGQADEAQ QFANDLAKVP GIVDFRIYRL DGHAAFSDNT TIQKVNQKLD NPEAFLLHSD
RQAVDARLPI AADHIQEILQ KGTLPKYTTD ASGVPTLTYW SRIDTSDQCQ ACHMEEEKAR
GVLCLTTTLD AVHNDIQETR YGAVIIMILA LLVVFLLTYL LIKSSVVRPI KDVSNAMDRI
SKGDWEQNVP ETGNDELAHM ARTFNRMIGE LKNTYRGLES EQNKLQTIIR SAKEGMIVTN
PDGDVVLVNP SAERILGKTD DEIRGEGFFQ LIDDPDYIRT FLETGGFEMP ETVVYKQRVL
NLYVRSIKDD HGEPIGSAAL ILDVTDEKRL EQQLRELSTT DGLTKLINRR RMDELLDEEL
KRAVRYGLNL SILLLDVDHF KKFNDTYGHE QGDHVLIALA AEMKSYFRNI DYPCRYGGEE
FFVILPNTDA DGAIKVADRL RERVAEKEVD GLRVTISIGV ASYPDLSITR PDAMVRAADS
ALYVAKEQGR NKVVYASEAK QTPH