| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1837 |
|---|
| Symbol | |
|---|
| ID | 4483990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 2280101 |
|---|
| End bp | 2282377 |
|---|
| Gene Length | 2277 bp |
|---|
| Protein Length | 758 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639722579 |
|---|
| Product | (NiFe) hydrogenase maturation protein HypF |
|---|
| Protein accession | YP_865751 |
|---|
| Protein GI | 117925134 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0068] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.131227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG CTGTGACATT GGTGCTAGCC GGTCGGGTGC AGGGTGTGGG ATTTCGCCCC
TATCTCTACC GTTTGGCCCA CAGTTTGGGG CTGGTTGGCG AGGTCTGGAA CGAAGGTGGA
CAGGTGCGCC TGCATGTGCA GGGCGACACC CCAGCGGTTG AGCAATTTCA ACGACGTCTC
ATGCAGGAAG CGCCCCCCCT GGCCCAACCG GTGTTGGTTT CGGCCACCGC AGCGCCTTTA
AGTTTAGCCA CCGATTTCAC CATTGTCACC AGCCAGCCGA GCCAGACCGC CCCCTATCTG
CCCCCCGATC TGTTTTGTTG TGATGAGTGC TTGCAAGAGA TCGCCGACCC CGGTGCCCGG
CGCTACCGCT ACCCCTTTAC CAATTGTACC CAATGCGGTC CTCGCTATAC CCTGATTGCG
GGCTTACCCT ATGATCGCTC CCGCACCTCG ATGGCGCAGT TTCCTCTCTG TAAGGCCTGT
TTGGCCGAGT ATCAAAACCC CCTGGATCGA CGCTTTCATG CCCAACCTTT GGCCTGTCCA
GCGTGTGGCC CGCAGCTCAC GTGGCAATAC GGATCTGAAA AAATTATAGG GGAATCGGCG
CTTACCCAAG CGGTGGCGGG TTTGCAGCAG GGGCTGATTG TGGCGGTTAA GGGGGTAGGG
GGCTACCATC TGTTGTGTGA TGCCCGCCAC GCGCCAGCGG TAGAGACTCT GCGTCAACGG
AAACAGCGTC CCCACAAACC CCTGGCGGTG ATGCTCCCCC AGCTGGGCGC CGATGGTCTG
CAAGGAGTCG CGGCCTACGT CAAACTTAGC GAACCCTATG GGCGGGCCTT ATTGGATCCT
AGTCGCCCCA TTGTGCTTAT TCCCCTTAAA CCCGACCATG GATTCGCCCC TGGGGTGGCA
CCGGGACTGG ATGAGGTTGG TATCATGTTG CCTTACAGCC CCTTACACCA TCTTCTTCTG
CAAGAATGGG GGGGGCCGCT GGTGGCCACC AGCGGTAATT TAAGTGGCGA ACCGGTGTTG
CTGGATGCCC AAGCGGCTGA ACAACGCTTA GCTGGGGTGG CGGATGCCTT TTTGCACCAT
AATCGCCCCA TTTTACGACC CGCCGATGAT GGGGTGGTGC GTCTGATAGC AGGTAAAGTG
CGTCGGCTCC GGGTTGGTCG GGGCAGCGCA CCATTGGAAT TGACCCTGCC CCAGCCCTTG
CTCCAGCCCA GCTTGGCGCT AGGGGGGCAG ATGAAGAACT GTGTGGCCCT AGGGTGGGCT
GCGCGGGTGG TGCTCTCGGC CCACATTGGT GAAATGGCAT CTCCCCGCAG CGCCCAGGTT
TTAACCCAGG TGTGTGATGA CCTACAGACC ATCCACGGCA TTCAAGCCCA ACAGGTGGCC
CATGACGCCC ATCCTGGCTA TACCACCACG CGGTTGGCTA AAGGCATGGG TAAGCCGTTA
ATCGCGGTGG CCCATCATCA TGCCCACGCT TCGGCGCTGG CTGGGGAACA TGGCATAGGA
GGGGGGGACG CCAAACTGTT GCTCTTTACC TGGGATGGCA CTGGAATGGG GGTGGGGGAG
TATCCTGCCA CACTGTGGGG CGGTGAGGCT TTTTATGGGG GGCCGGGCGC GTGGCAAAGG
GTGGCCTCCA TGCGCCCCTT TCGACTGCCC GGAGGCGAAC AGGGAGGGCG CGAACCCTGG
CGCATAGCCG CCTCCCTATG CTGGACCATG CAGCGCCCTT ATCCGCACGC GCCCGAAGCC
GCAGCGCTGC TGCATAAAGC ATGGAGCAAG GGCATGAATA GCCCTTGGAG TAGCGCGGTA
GGACGGCTGT TTGATGGCGC GGCTGCGCTG CTTGGATTGG TGCAAAAGAG CAGCTTTGAA
GGGCAGGGGC CGTTTTTGTT AGAGAGTCTC TGTGAGGGGC AGCCAGGAGA GGTCATCCCC
CTACCACTTA CCCTTGACTC GCAGTCGATC TGGCGGAGTG ATTGGTCGGC ATTGGTGCCT
GTCTTACAAG ATGGTCGGCG CAGTGTGCAG GCTCGGGCAG CTCTGTGGCA TAGCAGTATG
GCCGCCGCTT TGGTGGCACA GGTCGAGCAG ATTCAAAAAC ATTATCCCGT ATCCGCTGTG
GGGCTGACAG GGGGGGTGTT TCAAAACCGT CATCTTACAC AGCAGGTAGC CATGCATCTT
GCCCAGCGGG GCATAGCATT GCTGTTGCAT GAGCAGGTTC CCATGAACGA TGGGGGCTTG
GCCTATGGTC AACTGGTGGA ATTGGCCGCG CGGCAACAGC AGCATGCGCA GCAATAA
|
|---|
| Protein sequence | MKKAVTLVLA GRVQGVGFRP YLYRLAHSLG LVGEVWNEGG QVRLHVQGDT PAVEQFQRRL
MQEAPPLAQP VLVSATAAPL SLATDFTIVT SQPSQTAPYL PPDLFCCDEC LQEIADPGAR
RYRYPFTNCT QCGPRYTLIA GLPYDRSRTS MAQFPLCKAC LAEYQNPLDR RFHAQPLACP
ACGPQLTWQY GSEKIIGESA LTQAVAGLQQ GLIVAVKGVG GYHLLCDARH APAVETLRQR
KQRPHKPLAV MLPQLGADGL QGVAAYVKLS EPYGRALLDP SRPIVLIPLK PDHGFAPGVA
PGLDEVGIML PYSPLHHLLL QEWGGPLVAT SGNLSGEPVL LDAQAAEQRL AGVADAFLHH
NRPILRPADD GVVRLIAGKV RRLRVGRGSA PLELTLPQPL LQPSLALGGQ MKNCVALGWA
ARVVLSAHIG EMASPRSAQV LTQVCDDLQT IHGIQAQQVA HDAHPGYTTT RLAKGMGKPL
IAVAHHHAHA SALAGEHGIG GGDAKLLLFT WDGTGMGVGE YPATLWGGEA FYGGPGAWQR
VASMRPFRLP GGEQGGREPW RIAASLCWTM QRPYPHAPEA AALLHKAWSK GMNSPWSSAV
GRLFDGAAAL LGLVQKSSFE GQGPFLLESL CEGQPGEVIP LPLTLDSQSI WRSDWSALVP
VLQDGRRSVQ ARAALWHSSM AAALVAQVEQ IQKHYPVSAV GLTGGVFQNR HLTQQVAMHL
AQRGIALLLH EQVPMNDGGL AYGQLVELAA RQQQHAQQ
|
|---|
| |