| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_1781 |
|---|
| Symbol | |
|---|
| ID | 4483661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Magnetococcus sp. MC-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008576 |
|---|
| Strand | + |
|---|
| Start bp | 2201586 |
|---|
| End bp | 2202665 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639722523 |
|---|
| Product | 3-isopropylmalate dehydrogenase |
|---|
| Protein accession | YP_865695 |
|---|
| Protein GI | 117925078 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.500834 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00494446 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGA AGGTTTTGGT GCTCCCTGGT GATGGGATTG GTCAGGAGAT CACCGCAGAG
GCAGTGAAGG TTTTAAATTG GGCCATCCAA AACGGTGCGG ACATCACCCT GGAAGAGGGG
CTCATTGGGG GTACCGCCTA TGATGCCACA GGTACTCCTC TGCCCGCAGA GACCATTACC
CAAGCCAAGG CGGCACAAGC GGTGCTGTTG GGCGCGGTGG GGGGCACCAA ATGGGAACCG
CTGGACATTA GCGTGCGCCC TGAAAAGGGT TTGCTTGGTA TCCGTAAAGC ATTGGATCTT
TACTGCAACC TGCGTCCAGC GGCGGTTTAT CCCCAGTTGG CGGATGCCTC GACCCTCAAG
AAAGAGGTAG TGGCCGGCAT TGATATTATG GTGGTGCGGG AGCTCTCTTC GGGCATCTAC
TTTGGTCAGC CACGGGGGGT GGAAGATCTG GGCGATGGCC GCAAAAAGGG CTTTAACACC
CTGGTCTATA CCACCGATGA GATTGAGCGC ATCGCCCGTA AAGCCTTTGA AGCCGCCCGC
AAGCGCAGCA ATCGGGTCTG TAGTGTGGAT AAAGCCAATG TGTTGGAGTC TACCGAACTG
TGGCGCGAAG TGGTGAGCGA TCTGCACAAA CGTGAATACG CTGACGTGGA GCTTTCCCAC
ATGTATGTGG ATAATGCCGC CATGCAGTTG ATCCGCAATC CCCGTCAATT TGATGTGATT
GTGACCACCA ATATGTTTGG CGACATTCTT TCTGACGCGG CCAGCATGCT TACGGGTTCT
ATTGGCATGC TGCCGTCGGC CAGTCTGGGG GATCAATTTG CCCTGTATGA GCCCATTCAT
GGTTCGGCAC CGGATATTGC CGGCAAAGGC ATCGCCAATC CTCTGGCGAC CATTCTGTCG
GTGGCTATGA TGCTGCGTTA TTCCCTGGAG CTACCTCAAC TGGCCGATGG GGTAGAGGCT
GCGGTGGTTA CGGTGTTGGA TCAAGGCTTA CGCACCGCCG ATATTATGCA GCCGGGTATG
ACCCAGGTCG GCACCGCCCA GATGGGCGAT GCGGTGCTGG CGGCATTGAA TAATGCTTAA
|
|---|
| Protein sequence | MAKKVLVLPG DGIGQEITAE AVKVLNWAIQ NGADITLEEG LIGGTAYDAT GTPLPAETIT
QAKAAQAVLL GAVGGTKWEP LDISVRPEKG LLGIRKALDL YCNLRPAAVY PQLADASTLK
KEVVAGIDIM VVRELSSGIY FGQPRGVEDL GDGRKKGFNT LVYTTDEIER IARKAFEAAR
KRSNRVCSVD KANVLESTEL WREVVSDLHK REYADVELSH MYVDNAAMQL IRNPRQFDVI
VTTNMFGDIL SDAASMLTGS IGMLPSASLG DQFALYEPIH GSAPDIAGKG IANPLATILS
VAMMLRYSLE LPQLADGVEA AVVTVLDQGL RTADIMQPGM TQVGTAQMGD AVLAALNNA
|
|---|
| |